RNA id: TCONS_00017586


Basic Information

Item Value
RNA id TCONS_00017586
length 2278
RNA type mRNA
GC content 0.46
exon number 15
gene id XLOC_008901
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 942531 ~ 952891 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTATCAGACACACCACTGCATGAACATGACAGTAGCTCAGTCTCAAGGCGATGCTGATGGGAACTGTTAGAATTGTTTAATGGTAGCACAATATCTCTGAGGAAACCTCACAACAGGATTGAAGCATATTCAGAGGCAGCATCTGAAGTCTGAGCTGCAGCAGAATGTTCACGTACACAGTGTCTGTTGTGACTGGAAATCAGGTGTTTGCTGGGACTTTGAACTACATTTACCTGACGCTGGTGGGTGAAGAGAGAAGCAGCGACCGAACTCTGCTGGACAAATCCTGGTTTGAACGTTTGGACAGAGGAAAGGTGGTCTCCATTGACATCCATGTGGAGGAGACTCTTGGAGAGCTTCTGCTGGTCAAACTGGAGAAGGAGAAGTTCCTGATCAATGATGATTGGTACTGCAGGAGCATCAGTGTAACGGCACCCGCTGGAGACTGCTTTGAGTTCCCCTGTTATCGGTGGATAGCTGATCAAAAGGAGCTGGTTCTTCCAGAAGGACGGGGTCGATTGCCTCAAGATGAAAAGCTCTCAATAGTGAAAGAGTGCAGGCACCTGGAACTggaaaacagacaaaaacatttCAGGTGGAAAGAATGGAAACCCGGTTTCCCAATGTCTATTGATGTCAATGGATCCTCTGAACTTCCTTTGGACGTTAAGTTTGATACCGAAAAAGTAGTGGACTTCAAATTGCATTTCCTGAAAGGGATTGGAAATGTTGGTCTTAATAAATGTAAGGGTTATTACCAGTCTTGGAAAGACTTTGCAGATTTTGAAAAAGTGTTCATAACCATTGAGAACACAGTGTCAGAGCATTTGATGCAGAGGTGGAAGGAGGATGCAGTGTTCGGTTATCAGTTCCTAAATGGCTGCAATCCTGTGATGATCAAAAAGTGCACAGAACTTCCAGGGAAGTTTGTGGTCACGCAGGAGATGGTGAGGAACTCCCTGGATAAAGGAACAACTCTGCAGGATGAATTACAGGCAGGAAACATCTACATAGCAGACTATGAAATACTGGAGGACGTGCAACCCAATGACACAGACCCCAGCACCCAGCAGTATTTGGCCGCCCCCTTCTGCCTGTTTTACAAGAACGGACAAAATAAATTCATACCAATCGCTATTCAGCTCAGTCGTGAGGCCACTCCAGGACAGATGAACACAGTCTTTCTTCCCAGCGATAATCACTACGACTGGTTGTTAGCCAAGATGTGGGTGAAATCCTGCGACTTCAACGTACACCAGCTGGTCACACACCTTCTCAGAACACACCTGATATCTGAGGTGTTTGCCATAGCCATGTTCAGACAGCTCTCTGCTGTCCATCCTGTGTACAAGTTACTGATCCCTCATGTCCGTTTCACCATTGCCATCAACACTGCAGCACGTGAAAAACTCATCAATGACACTGGGGTCTTTAATGAGGCTAATAGCAGTGGAGGGATTGGACTTCAGCAAGTGATCCAAAAGGCCATGCAGACATTAACCTACAAGTCTCTGTGCTTCCCTGAGGCCATGAAAACTCGAGGAGTTGACAACCAGGAAGATCTgcccaactactactacagagaTGATGGCATGCTGGTCTGGGAGGCAGTGAAAAGCTTTGTCTCTGATGTGGTCAAGATCTACTATAGTAGTGATGAGACCGTTCAGGGAGATGAGGAGATCCAGGCTTTTGTTCAGGATGTTTGCTCCTCTGGTATGAAGAATTGTCCCAAGAACGGTGAGTTTCCAAGTGCCCTAAAAACCCAGGAGCAGCTGGTTGAGTATCTGACCGTGGTGATTTTCACAGCTTCAGCACAACATGCAGCAGTCAACTTTGGACAGTTTGACTGGTTTGCTTGGGTCCCGAACACTCCGTCCACCATGCGGAAACCTCCACCCACAGAGAAGGGCAAAGTGGATATGAAGTACATCATGGAGAGTCTGCCGGACCGCCAACGCTCCAGTTGGCATATAGGAGCAGTTTGGGCCCTCAGTCAGTTCCAGGACAGTGAGGCGAATACCCTGATAAGTATTTCACTGAAAAACTGGTCACTGAAGCAATTGAGAATTTCCGCAAGGAATTATTTGTCATCACTAAGATCATCAGAAAGAGAAATGAAACTCTGGAGCTGCCCTACTTGTATCTGTGTCCAGACAGGATCCCCAACAGCGTGGCCATCTGAAGAAAACATCTGTGGCGAACATCTTCAAAAGCTGCTCACAGTTCATTTACACAGTATTTGCttagcactttaaaaaaaaggcaGCAAAAAAC

Function

GO:

id name namespace
GO:0051122 hepoxilin biosynthetic process biological_process
GO:0034440 lipid oxidation biological_process
GO:0043651 linoleic acid metabolic process biological_process
GO:0019369 arachidonic acid metabolic process biological_process
GO:0019372 lipoxygenase pathway biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005635 nuclear envelope cellular_component
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051213 dioxygenase activity molecular_function
GO:0004051 arachidonate 5-lipoxygenase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131219-3 Predicted to enable arachidonate 5-lipoxygenase activity. Predicted to be involved in fatty acid metabolic process and lipid oxidation. Predicted to be located in cytoplasm. Predicted to be active in nuclear envelope. Human ortholog(s) of this gene implicated in artery disease (multiple); asthma (multiple); pancreatic cancer; and pulmonary tuberculosis. Orthologous to human ALOX5 (arachidonate 5-lipoxygenase).

Ensembl:

ensembl_id ENSDART00000153780

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019103 lncRNA downstream 33494 869961 ~ 909037 (-) True XLOC_008896
TCONS_00019105 lncRNA downstream 34224 877204 ~ 908307 (-) True XLOC_008898
TCONS_00019106 lncRNA downstream 41652 899089 ~ 900879 (-) True XLOC_008899
TCONS_00019104 lncRNA downstream 66546 875328 ~ 875985 (-) True XLOC_008897
TCONS_00019102 lncRNA downstream 93739 837015 ~ 848792 (-) True XLOC_008895
TCONS_00019107 lncRNA upstream 33253 986144 ~ 993389 (-) False XLOC_008902
TCONS_00019108 lncRNA upstream 33253 986144 ~ 993540 (-) False XLOC_008902
TCONS_00019109 lncRNA upstream 33253 986144 ~ 993587 (-) True XLOC_008902
TCONS_00019110 lncRNA upstream 54709 1007600 ~ 1008359 (-) True XLOC_008903
TCONS_00019111 lncRNA upstream 187554 1140445 ~ 1143069 (-) True XLOC_008908
TCONS_00017571 mRNA downstream 10683 722475 ~ 931848 (-) False XLOC_008890
TCONS_00017582 mRNA downstream 10683 925200 ~ 931848 (-) False XLOC_008890
TCONS_00017583 mRNA downstream 10716 926525 ~ 931815 (-) False XLOC_008890
TCONS_00017584 mRNA downstream 10716 926528 ~ 931815 (-) False XLOC_008890
TCONS_00017581 mRNA downstream 18550 920298 ~ 923981 (-) True XLOC_008900
TCONS_00017589 mRNA upstream 45948 998839 ~ 1003553 (-) True XLOC_008890
TCONS_00017590 mRNA upstream 64546 1017437 ~ 1022436 (-) True XLOC_008904
TCONS_00017591 mRNA upstream 72417 1025308 ~ 1031511 (-) True XLOC_008905
TCONS_00017592 mRNA upstream 80352 1033243 ~ 1036878 (-) False XLOC_008906
TCONS_00017593 mRNA upstream 80353 1033244 ~ 1038193 (-) True XLOC_008906
TCONS_00017537 other downstream 516775 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 592964 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 368899 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 882080 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1313078 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1672137 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 1783492 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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