RNA id: CI01000093_00224221_00233968.mRNA


Basic Information

Item Value
RNA id CI01000093_00224221_00233968.mRNA
length 4717
RNA type mRNA
GC content 0.42
exon number 10
gene id CI01000093_00224221_00233968
representative True

Chromosome Information

Item Value
chromosome id CI01000093
NCBI id null
chromosome length 1475560
location 223865 ~ 236442 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTGAAAAGGAAAGTCGTTTTAGAGAAACATTTTTTTCTTTTGGATTTTTTAAGCACAGAAACGTATTAAGAAAGTAAATAGGGTCAATTTGACTTGAATAAAATTGGTTAGATATTCTGTTTTACTCTTCGCCTGGCCTTAGATTCTCACGCATTAAACCAAATCCACATTCATATTCATGTGTAGTCTGTTCTGGTGATTATGCATTTAATGCGTAATCAGTGTGCGGCTCAGCCTGTGTTTTCATCTTCTGTGGACCCAAACATGTTTCAGATAAAATAGACTGGGAGAGTATGTGGGGCACACAGTGGGCTCTGTAGAGCTAGACTTGCTTGATTGGCAAGAATGAATGGAAGCGAGGGACAGCCCACCCCTGAGTTCACTGAGGCTTGTTACAAGGTTTGTTTTTCAAGCTTTGCCACACAAAAGGATTCTCAGTGGATCTAATATAATGGGCTGAAAGTTTCAAGAAGGTCTAAAGCGAATGGAAAGAAAAAGTGCTGCAAATTCCAGAAATTATTTGGCTTAGTTTAGCAGTACTAAACCAGTACCGTCTGTCAGTCAGCTAATGTGCATATTACTTGTCTAAAAAAAAGTTAGAAACATGAAAATTTATTTTAGAATATTGAAATGAAAATCAGGAATGGAAAGAGTGATTTATCACCCCTGGCAGATGTATATATACTGTATATGTTTTTTCCCAGCGTTTTCAAACCTCACCATGCTCATCAAGGCTGCATTTATTTGATCAAACATACTGTAAAAACATACTTACTAATAACTATTAAAATAACTACTTTTCTATTTTAATATGTATTTCAAATTGAATTTATGCCTGTAAAAATTGTCAGCATCATTACTCCAGTCTTTAGTGTCACATGATCCTTCAGAAATCATTCTAATGTCAAGAAACATTTCTTAATATTATGAATGTTGAAAACAGTTGTGCTGCTTAATATTTTTTTTGTAAACCATAATACTTTTTTCCAGGATTGTTTGATTATTATTAAGTACAAAAGAACAGCATTTATTAGAAATAGACATAACAGTATTTGTAATATTATAAATGCACTGTAAACCCAAACAATATAACTATCTTATAATGGAAAGTACCTTTTACTCAAAATGTGCCAAAAACTAACTATTATTTTTGAGTTCATTCAACATCTATCAGAGATTTAAGTTAACACTAAATATTTTTTTGAGTTTTTACAACTCCGCTAAAGTTTAGAGTTCAGGGAACTTGAAAAAATAGATTCAACCATAATCAAATATTTTAATGTCAAACATACGTCCGATAGTGTCATTCGTTTTTTTCTTTTTCTACCAAAATGTGACGTCATCACTGAACGTGATGGTCTGATTGGTATCAGTTACACACACATCATCCGCCCACAGGTTAGGTTATCCTAAAAACTATCAGTTGCATTAAATTAAGATGAACAAAACACTAAAAATTTATTTTGATTTAAATCAATGTTTATTTGTAATTTACAGTTATTAAAATAAAACTAGCTATGCTTACCTACGATATTTAAGTTTGCAAACTTACACAAATATTTCAGGTAAAAATCAGTTGTGTCAAATGTTTTGAGTTAGTAGAACTTATCCGGGTTTACAGTGTGTCTTTACTGTCAATTTTGATCAATTTATGCATTCTTCCTAGCTGGAAAAAAAAAATAAAAAATGTAGAAAAAAAATAAATAAAATTTACTGACCCCAAATGTTTAAATGGTAGTGCACAATATCATATTACAAAGGAAAAAGAGAGAAAATTGTTTTTATCATCTAAATGCTTCTCCTACAAAATAACATTTCCACATACTTCACTGTCTAACATACACACACACAAATCCCCAATTGTTTATACAGCCTTTGGGTTGTCAGAGCCCAAGCCCTCCCCACCCGACTAGAAGACTGTAGTGTACCTCTTACACTCTTCACATTTGTTGTGTACTCATAAAGACAGACAGGAGCACAAACAGGTAATGCTTCTCCAGCCAGCGAGCCTTGCTCTCTCCTCTTAATGGAGACATACTACCAGAATAACTGCCACACAGTCTCTATATTTCTTTCTTGTCTCTAGCACTCTGGTCTATCTCTGAGAATAAAAAAGTGAAAGATGTGCTTTGACTTGCGTCTAACTGCTTTCTATTTTCCCACCAGGTTCCCCGAAGTCTTTGAGCCGTAAGAGCTCAGAGTACATCCTGCCACAAGTACTTCTGTCATCAAGGGGATGTAACGCCAAACTCGAGTTTTCACTTAATCCTCTCACAGGTAAACGGCGAGACATTTTGCCTGAGGAATTTTGCGCTCAAAGAGTTTTTAAACAGAATGTGAATAAGGTATCAGTGGTAGAGCTTTCTAGAGAATGAAGCTCCTGGAATAGAGCTCTATCCACCTTTTATTTTTTGGTTGGAGGCATGAAACTGTAGAATCAGTTTTTCTTCACTAACCTGGAAGGAGGGCAACATGGCAAAGCCCTTCTACAGGCTTCAACGCTTTTTACGACGGACTCAGCTGCTCTTCTTGTTTCTCGGTGTCGCCTACATTATGGCTGGAAGTGTCCTTCTTCTGCAGAGACATGGATTGGTGGTGTCACAGCGTGGGACAAGCAGTTACTTTCCATTGCCGTCTTTGCCGTCTCCTCCCAGGTCCCTGGAGGCACCTGCCCTCCGGACAAGTTATGGAATAATGGGCGCACGGCACAACAGCAAGGGGGTGGGATACCAAAGCGTTTTGTCTGAAGACAATGCTGGACCACAATGGCTCACCTCACGAAACCAGGAGATCCGACATCTGAGACGTCGCTGGTTCCACAGCCTCATGTCTGAGCAGGAAGCGTCTAGAGTGGAGAAAGTTCTTCCGAAAAGAAAAATCCGACACAAAGGCACGTACATCGGATGCTTTCTGGATGACGCCAAGGACCGGGCACTCAAAGGGATGGTGTTCTATGACTTCCGGAAAATGACCAGCACCTTGTGTCAGGACACCTGCACCGAAAGTGGGTATCAGTTCGCTGGCCTTGAATATGGGTCCGAATGTTACTGTGGCAACCGCATCACAAGCACTCGGATGAAAGAGGAGGAGTGTAACTTGGACTGCAAAGGCGAGAAGGGCGCTATCTGTGGAGGTGTGTCCCGTCTGTCCGTTTACAAGCTGTCTAAAGTAGGATTATCAAACATACAGCTGTGTTTCATTTACAGCTCTCACAAAGGAACATGTGATCGGCGGTCTGCTGGGCCTCTTGGTTTATTTGGAGAGGCAAACAAAAGCCCTGGGGTTTCGGTTATAGAGTGCTTGTTTACTCGGCAAAGCAATGTTCTCCATTCTTCCCTGCCTTTAGACAGGAACGTGCGCTACCGGGGGTGTTTCAAAAATCCTGACAAGACAACAGCAGCTTCCCTGGCCCATGCTGTGCAGCCCAACCTCACCTCCCAGTGGTGCATCAAGACCTGTATGGATCAGGAGTTTCCTCTGGCCCTGGTCAGGAACCCCGACTGTTTCTGTGGCTATGCCACCCCTCACTTCACTCTTCATGAGCCAGTAAAAGAGGAGCTTTGTGCTGTGGAAAACAGCAGTCTGCCTACCCAGAGTTCCCATCAGCTATTCCTCCAGGTCTATCAGACACCTGTTCAAGATTCCAGATGCACAGAGAAGAAGTTTCTACCTGAGAAGTCGAGCTCACTGGTGGCTTTGTCCAGTTTTCCTGGTGCTGGGAACACCTGGGTGAGGCATCTGATCGAGCTTGCCACAGGCTACTACACAGGCAGTTACTACTTTGATGGCACCCTCTACAATAGAGGCTTCAAGGGTGAGAAAGATTACTGGAAGAGTGGACGAACCATCTGCGTGAAGACGCATGAGAGCGGTCAGCGGGATATAGAGATGTATGACTCAGCAATACTGTTGATAAGAAACCCCTACCGCTCACTCATGGCTGAGTTCAACCGCAAGTGCGCCGGGCATCTTGGTTACGCTTCTGATCAGCACTGGAAGAGCAAAGAGTGGCCAGAATTTGTGGGTAGTTACGCCTCCTGGTGGGCTTCTCACGTATTGGACTGGCTGCGTTATGGAAAGAAACTTCTGGTGGTGCATTATGAGGAATTGCAGGAGGCATTGGTGCCCACGTTACGATCCATCACTTCGTTCCTCAATGCCAGTGTCGGTGAAGAGCGTCTTCTCTGTGCTGAGTGCAACAAGGATGGCCACTTCAAGCGCTCAGGTGCGCGACGGCCCACCTTTGACCCCTTCACCCCAGATATGAAACGGCTAATTGATGGCTACATCATTACTGTGGACCAGGCACTCAGAGCCAGCAACCATTCTGGCTTACCACAGGAGTATCTTCCAAGATGATAAGCCCAGAACTAGAGTACAGAAGTGCTCGTCTTGCTCAAGTTTCAATGCTACTACCATGACCAGGAGATATTTTGATACATTTATTTCCTCGCATATTGAGGTCGAAAATAATGCCATATGATGCTGTTCTTCACTGGTGTGCTTTGAGATCGTCATGTTTTAACGGCGGTCTGTAGAGGGGAACAAAGTTCAACACTGTTGACATAACGTGGTGAATAATTACAAAGATTGCAGACCCGAAACTCAAAAACATCTCTAGTCGGAGGCAAAATAAGTTTTCCTTCCTACTTTGGGAGGAAAGTTGAGTGCTTAATTACATACTTCAACTACAAGTCAACAAGAGGCCTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU349430 lncRNA downstream 31939 191098 ~ 191926 (-) True G307522
TU349429 lncRNA downstream 34321 189305 ~ 189544 (-) True G307521
TU349427 lncRNA downstream 37917 185714 ~ 185948 (-) True G307519
TU349426 lncRNA downstream 38294 185274 ~ 185571 (-) True G307518
TU349404 lncRNA downstream 67476 146434 ~ 156389 (-) False G307499
TU349550 lncRNA upstream 78831 315273 ~ 339260 (-) True G307622
TU349577 lncRNA upstream 111256 347698 ~ 347953 (-) True G307648
TU349588 lncRNA upstream 127187 363629 ~ 364071 (-) True G307659
TU349544 lncRNA upstream 139466 375908 ~ 376290 (-) True G307617
TU349545 lncRNA upstream 143491 379933 ~ 380530 (-) True G307618
CI01000093_00044285_00045637.mRNA mRNA downstream 178213 44016 ~ 45652 (-) False CI01000093_00044285_00045637
CI01000093_00021721_00029528.mRNA mRNA downstream 194337 21721 ~ 29528 (-) True CI01000093_00021721_00029528
CI01000093_00000644_00001222.mRNA mRNA downstream 222643 469 ~ 1222 (-) True CI01000093_00000644_00001222
CI01000093_00372074_00372877.mRNA mRNA upstream 135353 371795 ~ 373025 (-) True CI01000093_00372074_00372877
CI01000093_00441786_00443029.mRNA mRNA upstream 204926 441368 ~ 443590 (-) True CI01000093_00441786_00443029
CI01000093_00601248_00607534.mRNA mRNA upstream 364643 601085 ~ 607729 (-) True CI01000093_00601248_00607534
CI01000093_00633602_00642455.mRNA mRNA upstream 395184 631626 ~ 642522 (-) True CI01000093_00633602_00642455
CI01000093_00643216_00644177.mRNA mRNA upstream 406533 642975 ~ 644177 (-) True CI01000093_00643216_00644177
TU349703 other upstream 831577 1073022 ~ 1073753 (-) True G307751

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023423 False 2665 mRNA 0.40 6 NC_007128.7 3281440 ~ 3303805 (-)