RNA id: TCONS_00023423


Basic Information

Item Value
RNA id TCONS_00023423
length 2665
RNA type mRNA
GC content 0.40
exon number 6
gene id XLOC_011846
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 3281440 ~ 3303805 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAAGAGGAGGAGTGTAACTTGGACTGTAAAGGTGAGAAGGGCTCCATCTGTGGAGGAGTGAgccgtctgtctgtctacaaGGTGGAGGAGCTGCTGCCTGGACAGAGGAGATACAGGAACGTGCGCTACCGAGGCTGTTTCAAAAAACCTGACAACACCACCGCAGCGTCCCTGGCTCACGCCGTCCAGCCAAACCTCACCTCGCAGTGGTGCATTCAGACCTGCATGGATCAGGAGTTTCCTCTGGCCCTGGTCAGGAAGCCGGACTGTTTTTGTGGTTTCGCCACTCCTCGATTCACCCTTCACGAGCCATTAAAAGAGGAGCTCTGCGCTGTAGAAAACAGCAGTCTGTCCACCCAGAGCTCCCATCAGCTATTTCTCCAGGTCTATCAGACACCTGTTCAAGatTCCAGATGCACAGATAAGAGGTTTTTGCCTGAGAAGTCAAGCACACTGGTGGCTCTGTCCAGTTTTCCTGGAGCTGGAAACACCTGGGTCAGGCACCTGATTGAGCTCGCCACCGGCTACTACACAGGCAGTTACTACTTCGACGGCACCCTCTACAATAGAGGCTTCAAGGGTGAGAAAGATTACTGGAAGAGCGGACGAACCATCTGCGTGAAGACACATGAGAGCGGCCAGCGGGATATAGAGATGTATGACTCAGCAATACTGTTGATAAGAAACCCCTACCGATCGCTCATGGCCGAGTTCAACCGCAAGTGTGCTGGGCATCTGGGCTACGCTTCTGATCAGCACTGGAAGGGCAAAGAGTGGCCAGAGTTTGTGGGTAGTTATGCCTCCTGGTGGGCCTCTCATGTGCTGGATTGGCTGCGCTTTGGAAAGCAGCTTCTGGTGGTGCATTATGAGGATCTGCAGCAATCGCTGGTGCCAACATTACGATCCATCACCTCTTTCCTCAACACCAGCGTCAGTGAAGAGCATCTCCTCTGTGCCGAATGCAACAAGGATGGTCACTTCAAGCGCTCAGGTGCGCGACGACCCGCCTTCGACCCCTTCACCGCAGATATGAAGCGGCTGATAGATGGCTATATCAACACTGTGGACCAGGCTCTCAGAGCCAGCAACCATTCTGGATTACCACAAGAATACCTTCCTAGATGATAAGTCCTCAAGTAGAGCATTCATTGATAAACTCACACACTGAGGCTGAAAATAACAGCATGCGGTGCTGTTCTCCACTGGTGCGCTTTGAGACCGTCATGTTTTAACGGCGGTCTGTAGATCAGAGACTGTTAATTATAAAAATAGAGCCTGACAAAAACATCTCTAGTCAGAGGCTAAATAAGTTTTGCTTTTTCCTTTGGGTGGAAACTTTGAGTGCTTAATTACACCCTTCAGCCACAAGTCAATAAGAGGCCTAATAAACAACTAACACAATCACTTATGAACTAATGAGAGTGGTAGATCATAACCACATGTCAGACACAATAACTACagcatagtttttatttttttatttttattttttgaacatttCAATAAAGCTTAAAGAGAGCAACGGTTAACACCAGAGTCcaaaatattcaaatcaattGCTGTTTATTTCTAGATataataattgattaaaaaaaaaaaaaaactatgccaAGGTGTAAACTGAATGAAATCATACACATTTAAAGTGTATGCTAATGTGTGTATGTTTTAACGGCAGTCTGTAAATCAGACTTGATGATACAAATTTAGTCCGGCAGATCTGAGAATCAAAAATATCTGTAGTCAGAGGTTAAATAGGTTTGCTTACTCCTTTGTGAGGATACTTGAGTGCTTGATCGCATCCTTCAACTACAAGTCAATGAGAGACCTAATAAACAACAACCGCAATCATTTATGAACTAATGTGAGTGGTAGATCATAACCACGTCAGACACAATAACAACATCAtcagttgcttttttttttttttttttttaaataaagcataaaTGGAGCAACGGTTAACACCAGAGGCcaaaatattcaaatcaattGCTGTTTATTTCTAGATATAATAATcaacacttaaataaataaataaaaaactatgagAACGTGTAAACTGTACTAAAGCATACATATTTAAAGTGTATGCTTAACGTATGCATGTTTTATCGGCAGTCTGTAGATCAGACttgatacaaatttaaaatgagaaTCAAAAACATCTCTAGTCAGAGGTTTAATAGGTTTGCTTTCTCCTTTGTGAGGATACTTGAGTGGTTAATCGCATCCTTCAACTACAAACCAACAAGAGGCCTAATAAACAACAGATGTAATTGCTCATGAACTAATGTGACATGAGTGGAAGATCATAACAATCCGTTGGATACAATAACAAcatcattgttttattttgataatgtaGAGGTGTGACAGAACAGCagaaatattctttttaaataaattcagttATAATAAATTTAGTAATTACTATTTTCTtcaagattaaaaaatatatccGCTACAAACACCAGACCACAGACTGTTATGTTCAATGGCTGTTTATTTTTTAGGTTTAATAATTTCTTATATATAAAGTAAGATAGTCCTAAAGGTGCTCAAATTTAGGGAACAAAACAGTGCTGTGTGTtgataagatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000169136

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024519 lncRNA downstream 230344 3020946 ~ 3051096 (-) True XLOC_011844
TCONS_00024809 lncRNA downstream 845162 2430899 ~ 2436278 (-) True XLOC_011835
TCONS_00023403 lncRNA downstream 859411 2401258 ~ 2422029 (-) True XLOC_011834
TCONS_00023395 lncRNA downstream 1356549 1915788 ~ 1924891 (-) True XLOC_011829
TCONS_00024518 lncRNA downstream 1402060 1877638 ~ 1879380 (-) True XLOC_011828
TCONS_00024520 lncRNA upstream 519304 3823109 ~ 3829826 (-) True XLOC_011848
TCONS_00024521 lncRNA upstream 600875 3904680 ~ 3912731 (-) False XLOC_011849
TCONS_00024522 lncRNA upstream 944086 4247891 ~ 4252248 (-) False XLOC_011851
TCONS_00024810 lncRNA upstream 947097 4250902 ~ 4252232 (-) False XLOC_011851
TCONS_00024811 lncRNA upstream 947774 4251579 ~ 4252232 (-) True XLOC_011851
TCONS_00023421 mRNA downstream 91370 3183276 ~ 3190070 (-) True XLOC_011845
TCONS_00023420 mRNA downstream 335848 2902113 ~ 2945592 (-) True XLOC_011843
TCONS_00023419 mRNA downstream 446676 2833685 ~ 2834764 (-) True XLOC_011842
TCONS_00023417 mRNA downstream 464405 2810776 ~ 2817035 (-) False XLOC_011841
TCONS_00023425 mRNA upstream 413579 3717384 ~ 3815693 (-) True XLOC_011847
TCONS_00023426 mRNA upstream 537207 3841012 ~ 3986236 (-) False XLOC_011849
TCONS_00023427 mRNA upstream 682333 3986138 ~ 3986236 (-) True XLOC_011849
TCONS_00023428 mRNA upstream 923449 4227254 ~ 4231532 (-) True XLOC_011850
TCONS_00023429 mRNA upstream 935632 4239437 ~ 4245311 (-) False XLOC_011851
TCONS_00023401 other downstream 1115670 2165656 ~ 2165770 (-) True XLOC_011832
TCONS_00023378 other downstream 3076130 205194 ~ 205310 (-) True XLOC_011808
TCONS_00023441 other upstream 1939535 5243340 ~ 5296561 (-) True XLOC_011855
TCONS_00023445 other upstream 2367113 5670918 ~ 5731699 (-) True XLOC_011860
TCONS_00023449 other upstream 2659170 5962975 ~ 5963065 (-) True XLOC_011866
TCONS_00023450 other upstream 2663444 5967249 ~ 5967346 (-) True XLOC_011867
TCONS_00023451 other upstream 2709750 6013555 ~ 6013671 (-) True XLOC_011868

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000093_00224221_00233968.mRNA True 4717 mRNA 0.42 10 CI01000093 223865 ~ 236442 (-)