RNA id: TCONS_00023420


Basic Information

Item Value
RNA id TCONS_00023420
length 4781
RNA type mRNA
GC content 0.39
exon number 2
gene id XLOC_011843
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 2902113 ~ 2945592 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gttCAACTAGTTAGAATGAGACCTTAATACAttgagtttttttaaacaaataatttaaacaaacatcgTCCACAATTGCCAAAACAAATGGGggtaaaataagcttcttctttTGATCCTGAAGTGAAATATGACTGGGACATTTTCTTGACACATTTACCAACTGAAGTCATTCAGGCATTATAAGTGTGATCACGCGTGATGTGACGCGACATGAAAGGTGGAGGTAAAacgagagagagtgagagagaaagagagagagagagaaacgcgGTCTCTCAGAGTCTCGCATCATCCTCAGTGTTTCCTCTCTGATGTGTTGTGTGTAAATGTGGATCTGTAAGGATGAAGACTGAGGACGTTTGGAGTCTCCGTCAGACACGCTGCTCTTTAATGTTCACGAGGAACTGAAGAAACACTCCAGCAGGAACTAAACACACTTCTTCGTCATGGATCTTTCATTCATGGCCGCTCAGCTGCCAGTGATGAGCGGTGCGTTCATGGATGCGTCTCCTCTGGACGACTGCAGCACGGAGCACTCGCTCTTCAACTCATCCGCCAGTGTAAACGCAGGAGCCGCAGTTTCAGCCCCAGCCCAGCAGGAGGAGCAGCACCGAGTGTCTAGTGACGCTGTGTGGCTGTGGATCGCCATCATCGCCACTATCGGGAACATTGTGGTCGTCGGCGTCGTGTACGCTTTCACTTTCTAAAGACGAAGCATCGGATGCACTTCGAATACATACaattgaggtcaaaattatttgcactcctgtgattttattttttttctttgttaaatatttcagattcaggaatttttcacagtatttccattaatattttttcttctggagaaagtcgtatttgttttattttgcctagaataaaagcagttttaaatttagttaagcccttaaatgtcactttaagctgaatactaataccttgaaaaatatctggtcaaatataatgtgccgtcatcatggcaaagatgaaataaatcagttattaaaactattacatttagaaatgggttgaaaaattcttatcgttaaacagaaattggggggaaaaatagaCAGGAttgaattctgacttcaactgtatgtttcaGTCCAGCTATTTGTATGCGCAATTGTAAATAATTGCATTGATTCTTGATGGAAACAGCAAAAtgcttgatggaaatgccaagatgcacataaattatgaaaatgtgcataaaaaacacagtttaagtaggataaactttttattccataagacaaaatgtgcataaactatggaAATATCCTAAATATAGTATATTTCCTAAAACTACGGAAAAGAACTATGGAAATACTTTTAGCGAATAAATTCCAGAATGCAGATTTAATTAAAATGCTGATATGACTCTGCTATActttaacgccccattcacacggggcttctgcgtcaatgcttgactgaaggcgtgtctgaagttggggctgaagcggtcgtcatagaagcgtcagccaatgaaattcagtctgcaataggccactgtctagctggtgtatttgcatacagcgatctgattggctgacgcttccatctgcacttgaaaagttgagctagtcccaacttctgcagcgaacaACGCCTCTGAAGCTGCGCCGACAGATCCAGAATGCAGTTTGGCaatgcttgacgtcacccattcaaagtgaatgggaagcgttgacgctgacgctgacgccccgtgtgaatggggcgtaagagatcatgtgatgatggaaaaaaaaaaacatgtgcaatGGACAGCATTAATGGACCAATCAGTGGGTCCAAAcatcatcacagtgcttcagtattactattctactattattattccctccagcGCTCCCGTCTCAtgcctccaaaagccaccgcaTTCACCACttcattgcatttcgtcttcgtcttttaggccgtactcacactaggtacagttgcctcgaaccgggccaaagcacgcttgtcccccctcccgtctcccccgacggcccgcgctcacaccatatcgggcctcggcacgcttacgtcatcgctgctgctctgttcagtgagaagcgctctctatggcaagcctttatagcatttaaatctttgttctgactccataaatatattagagatCTCTcttattatattttgactagtcataattataattccactactcagaatgacaattagagatatctgcaattacaattgtactagtacgaaatcagattggagatatctgcaaatatattatgactagtcatattcctccattgacttccattgaaaaacatttgcagatatctctaaatgaattttgactagtaacaattgtaattagagatatctctaactgagttctTACTGgtaataatacatttggagatatctttaattcatcatatttagagatatttacaaatatatttgaagatatctctaattaatttactaatagtcgaattacagttgtagatatcttgaattggatttttgactagtaaaaattcatttggagatatctctaattacaactgtgactaatcaaaacttatttagagatatctgcaaatattttttaatggaagtcaatgaaagaatatgactagtcagtcataatatatttgcagatatctccaatctgactagtcgaattatgattatgactagtcaaaatataattagagatatctctaaatatatttatggatagtcagaacaaggtttaaatgctaaaacggcttgccatacgctctcacccatagcacagtggagatttctctagttatatcctttcagtcggtttgatatgcagtgacatgcagtcaaatatttcgccaaacagtcctttgggatgcggtgacacgcagtcagatatttcactgaacagatccgccacttttggcgctcataaacaatcataaagctctcgtgctgcaggaatgaggaggtctgctgaaggtgcagctgtcgtgcagtgaggggtttgtgtctttaataaactacggcagtttgccttcactgaacagtaagaatgattaataaatccatatgaaacagtcccttaaaagtcacgtctcgcttttcAGTtttcaaagcccaagtgaaccgcgctcaggcacacctcttccaaccgggccagggccggccaagtaaaccgtgcttgagcccgattaagcgcactcacacttctcaaacgatccgggaaacgggcctgggcacagtacggatggcatagCGTGAGTACGCCCTTAAGGCTCCAgaaaaacaccacacactgaaaaaaattatttaaaaatgattccttggatttactacatttttttaagcggttgtaaacagtttatttgggctgaatttaaacaaacaaattgagttaaacataaatacatttaatttgtttgtttaaattcaacccatataaattgtttgcaacagttctgcagacatcatttttttcagtgcagtggCAAATCCCAACAGACTAAACTACACTTCTCTGTCTTATATTTGCTCTAGTTTACCAAGAAGTGATGATTAGGTTCTCATTTGTTTCTCAtaggatggaaacgctgctttactTGCAAACGTTTTATGTAATATTTCATTCCTTAACTTGCATCTTTGTATGGAAATATAGCTATTGTTCGTATTTGTCTCATTTCACCATCTGGAGACCTGTGACCTTATGTTCATATCCAGGGGACAATCTGAATGACTCAGGTCACTGAAAGATGACTTTAATACTGATCTGAGAACTGCTGGACAATTATTACATTAAAGGATTGTTTGCACAACACCAATTAAATTTAGACTTTCTTTGTAATTAAACTGGTACGTTTTAAAGTGTAAGTGATGACAATGGCATTATTATGTGAGTATAGAGATGTGATTTAGTGAAAGCAGTGAATTTGTGCACATTTACATATTTCTGTTCAGTCTACAGGCATGAGAAGTACAATACTCATAAATTcgatttccttcggcttagtccctttatttatcaggggtcaccacagcacaataaaccaccaacttatgcagcatatgctcttccagctgcaacccagtactggaaaacacccatacacttgcacgttcacactcacacactaaggccaatttagttcatcaattcccctatatcgcatgtgtttgcactgtgagggaaaccagagcacccggaggaaacccacgccaacatgaagagaatatgcaaactccacacagaaatgccgattgaccttcttgctgtaatcaCAGAGCCACAGTGCAGCCCCCCACCCCAAGTAAAGTACTTTAAAATGGAAGAAAAAACAATGTAAACATAACCAAAAACTCCAGTGATTTTGAGCCCATCATTCAGTGTGTTTATTTACTTCTGTCTGTAAAtgtctgtaaatatatatttattcagtgttttaatttcagtaatattattgaatgaTATGCTGAACTGTTTAGatgaattatgtttaatacagtttgtaaagttttCTGTCTTTACTTACTGTAGATATATATTTCAAAAGAGCTGCTGTAGCTTTATCAAACAAGTGGTTGTAACTGGATTTGTATTGTACATtaagtaaatgttaaaatgtttgttttttatgttttcagtTTCTATACTCGAGATTATTCTGCATAATCTgcaatttgcaaataatacattttgtgcaAAAAGGTTTGCAGATTGTGTCTGGCCCTGCTGTAACCATATTGCTCCctgaaaaataataaactattttcaAATATGGTTTTTCTTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000174899

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024809 lncRNA downstream 465835 2430899 ~ 2436278 (-) True XLOC_011835
TCONS_00023403 lncRNA downstream 480084 2401258 ~ 2422029 (-) True XLOC_011834
TCONS_00023395 lncRNA downstream 977222 1915788 ~ 1924891 (-) True XLOC_011829
TCONS_00024518 lncRNA downstream 1022733 1877638 ~ 1879380 (-) True XLOC_011828
TCONS_00024517 lncRNA downstream 1023622 1877638 ~ 1878491 (-) False XLOC_011828
TCONS_00024519 lncRNA upstream 75354 3020946 ~ 3051096 (-) True XLOC_011844
TCONS_00024520 lncRNA upstream 877517 3823109 ~ 3829826 (-) True XLOC_011848
TCONS_00024521 lncRNA upstream 959088 3904680 ~ 3912731 (-) False XLOC_011849
TCONS_00024522 lncRNA upstream 1302299 4247891 ~ 4252248 (-) False XLOC_011851
TCONS_00024810 lncRNA upstream 1305310 4250902 ~ 4252232 (-) False XLOC_011851
TCONS_00023419 mRNA downstream 67349 2833685 ~ 2834764 (-) True XLOC_011842
TCONS_00023417 mRNA downstream 85078 2810776 ~ 2817035 (-) False XLOC_011841
TCONS_00023418 mRNA downstream 90121 2810976 ~ 2811992 (-) True XLOC_011841
TCONS_00023414 mRNA downstream 180649 2684992 ~ 2721464 (-) False XLOC_011840
TCONS_00023415 mRNA downstream 180649 2694034 ~ 2721464 (-) False XLOC_011840
TCONS_00023421 mRNA upstream 237684 3183276 ~ 3190070 (-) True XLOC_011845
TCONS_00023422 mRNA upstream 335848 3281440 ~ 3291369 (-) False XLOC_011846
TCONS_00023423 mRNA upstream 335848 3281440 ~ 3303805 (-) False XLOC_011846
TCONS_00023425 mRNA upstream 771792 3717384 ~ 3815693 (-) True XLOC_011847
TCONS_00023426 mRNA upstream 895420 3841012 ~ 3986236 (-) False XLOC_011849
TCONS_00023401 other downstream 736343 2165656 ~ 2165770 (-) True XLOC_011832
TCONS_00023378 other downstream 2696803 205194 ~ 205310 (-) True XLOC_011808
TCONS_00023424 other upstream 345748 3291340 ~ 3291456 (-) True XLOC_011846
TCONS_00023441 other upstream 2297748 5243340 ~ 5296561 (-) True XLOC_011855
TCONS_00023445 other upstream 2725326 5670918 ~ 5731699 (-) True XLOC_011860
TCONS_00023449 other upstream 3017383 5962975 ~ 5963065 (-) True XLOC_011866
TCONS_00023450 other upstream 3021657 5967249 ~ 5967346 (-) True XLOC_011867

Expression Profile

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