RNA id: TCONS_00023417


Basic Information

Item Value
RNA id TCONS_00023417
length 1331
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_011841
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 2810776 ~ 2817035 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAGACATCATTGCAATGTGCAGTTCCTTCATTTACCTCCGTGAATCTCCTGTTATATTTCAACATTTGGTTAAAAACAGACTTCTGAATCGACGCACTTATGCTCCCTTGAGATGAATGTAACAGATTCATGGATATCCTTCTCCACCCAGAGCAATGAATCTAAAGACTGCTACCCGCCTGCACATCCGGAGAGGAAGATATTCGTAGCCTTGCACTTGACTGTAATCCTGATCGGCATCCCGTCCAACATCTTCTTTCTGTTTGTGTCGTACCGGCTCATCCGACAAAAGAACGAGCTGGGTGTTTATCTGTTCAACCTCGCCCTTTCTGACCTCCTCTTCATCACGTGTTTGCCCGTATGGATTGAGTTCGCTCTCAACGACCAATGGCTTCACGGTGAAGCTGCATGCACCGTGTGCGTTTTCCTGCTCTTTACGTATTTCTACACGAGCATCGTACTTTTAAGCTGCATCGCAGTGGATCGATACTTAGCCATCGTTCACCCGCTCAAGTTTTCAACATTTAGAAAGCGGCGGATTGCGCTCAGCTTGAGCGTCGCTGCTTGGATTTTTGCTCTTGTATTCAATGCGATCACTGTGGATCTAAACGGCGTTTACGATGAGGAAAATAAAGTCTGCTTGGATGTTTATTTGTCACATAAACAAAAATGGGCCAACGTGACTCGTTTTGTAGTCGGTTTCCTCATTCCTGCACTGGTAGTGGGTTTCTGCTATTGGCGCATTTGCTCTGATATCAAGAACAACCAAACTCTCAGGTCGATGGAGCTTCAGCATGTGTTTAAGCTTTTAGTCTGCGTTTTATTGACTCTGTACTTGTGTTTCGGGCCTGTGCACATCATGATGGTTTTGAAGGTTTTGCTGGAGAGTTGTCCACATCCCAGTTGGCTCTTCTTCGCATATAAGACCAGTGTTTTTTTGGCGACGCTAAACTGCCTGGCCGATCCCCTACTGTATGGCTTTACAAGCAGAACAGGTAAAGACAGTGCCTCCGGTATGTTATTAATCCTCAGAAGAGCTTGGAGGAAAGAAACGCAGACAGAAACTGTACAGCACAATGAACATATCAATGGAACGGCCATGCTCTCCAATGACAAAAGTCCCATTTAAATATGAATGTCCAATGTGAATGAATCAAGCTGATATGGATATATGCTATAGTGACTCACAGGACTGTAACTAACTAATAAATAGAATTGAGGGaagctgtatgtttttttttacaccagtTCAATGACTAGTTTAAAAGTAAGCAGTAGCTCATGCTTACGGAAAAACTGCATGTGTGAGGTTTCACTTTTACACCCACT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:1903707 negative regulation of hemopoiesis biological_process
GO:0035025 positive regulation of Rho protein signal transduction biological_process
GO:0051482 positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-120709-81 Predicted to enable G protein-coupled receptor activity. Acts upstream of or within negative regulation of hemopoiesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human GPR65 (G protein-coupled receptor 65).

Ensembl:

ensembl_id ENSDART00000152002

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024809 lncRNA downstream 374498 2430899 ~ 2436278 (-) True XLOC_011835
TCONS_00023403 lncRNA downstream 388747 2401258 ~ 2422029 (-) True XLOC_011834
TCONS_00023395 lncRNA downstream 885885 1915788 ~ 1924891 (-) True XLOC_011829
TCONS_00024518 lncRNA downstream 931396 1877638 ~ 1879380 (-) True XLOC_011828
TCONS_00024517 lncRNA downstream 932285 1877638 ~ 1878491 (-) False XLOC_011828
TCONS_00024519 lncRNA upstream 203911 3020946 ~ 3051096 (-) True XLOC_011844
TCONS_00024520 lncRNA upstream 1006074 3823109 ~ 3829826 (-) True XLOC_011848
TCONS_00024521 lncRNA upstream 1087645 3904680 ~ 3912731 (-) False XLOC_011849
TCONS_00024522 lncRNA upstream 1430856 4247891 ~ 4252248 (-) False XLOC_011851
TCONS_00024810 lncRNA upstream 1433867 4250902 ~ 4252232 (-) False XLOC_011851
TCONS_00023414 mRNA downstream 89312 2684992 ~ 2721464 (-) False XLOC_011840
TCONS_00023415 mRNA downstream 89312 2694034 ~ 2721464 (-) False XLOC_011840
TCONS_00023416 mRNA downstream 89440 2698080 ~ 2721336 (-) True XLOC_011840
TCONS_00023411 mRNA downstream 120693 2606697 ~ 2690083 (-) False XLOC_011840
TCONS_00023413 mRNA downstream 125750 2610701 ~ 2685026 (-) False XLOC_011840
TCONS_00023419 mRNA upstream 16650 2833685 ~ 2834764 (-) True XLOC_011842
TCONS_00023420 mRNA upstream 85078 2902113 ~ 2945592 (-) True XLOC_011843
TCONS_00023421 mRNA upstream 366241 3183276 ~ 3190070 (-) True XLOC_011845
TCONS_00023422 mRNA upstream 464405 3281440 ~ 3291369 (-) False XLOC_011846
TCONS_00023423 mRNA upstream 464405 3281440 ~ 3303805 (-) False XLOC_011846
TCONS_00023401 other downstream 645006 2165656 ~ 2165770 (-) True XLOC_011832
TCONS_00023378 other downstream 2605466 205194 ~ 205310 (-) True XLOC_011808
TCONS_00023424 other upstream 474305 3291340 ~ 3291456 (-) True XLOC_011846
TCONS_00023441 other upstream 2426305 5243340 ~ 5296561 (-) True XLOC_011855
TCONS_00023445 other upstream 2853883 5670918 ~ 5731699 (-) True XLOC_011860
TCONS_00023449 other upstream 3145940 5962975 ~ 5963065 (-) True XLOC_011866
TCONS_00023450 other upstream 3150214 5967249 ~ 5967346 (-) True XLOC_011867

Expression Profile

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