XLOC_011844


Basic Information

Item Value
gene id XLOC_011844
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 3020946 ~ 3051096 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024519
CAAGGAGTCGCGTGGATTGCGCAGAAGCAAAAACAGGAGAGAAAGCTGCGGAGGAGAGAGGAGCTCATGACGGCTCGTGAACACGTGAGATGAAACTGGGCAGGAAAACACTGGAGACTCAACGTAGGAACGCGCAGCCTGTCTCCGTGATTCGGGATCTCCCTGAAAGCTGAAGGATGATGGGAACggactgtctgagtgttcagggATGTCTGCGCGTCTCAGAAAGACCAGCATGTCTGATGCGAAGTTTCTCCTGATGCTGTGCAAGACTGGCGTGAGAGGAAAACTTCAGACTTCTCCCAGAAAAATGGTAAACACTGCTCTGAGTGATGAGGAAAAGGGCATTCAAGACAAGGAAAGCAAAGAGGAATCCATTCTGGCTATGCTGGGAATCATCGGGACCATCCTCAACCTACTGGTCATCATCTTTGTGTACATTTACACGACTCTGTGATGCAAATCTGAACTTCGTGATGATCCTGGCATTAAAAAAGCAGGCCGATCCACCAGGGACCCACAGAAACATGCGCTCAAATGCAGAAACACGGACAGCAGATTCCCTTCAAACACAGATGAGTCCGTGGGGAACTTCATAACTTGTAAATATGCACGCTATTTACTCATTTCCGCCTGCGATCCGGAGAAACGGGACCATTTTTATGCATGGCTCAGTTCTGATCCGAATAGCTGTTTTTAATAGCAAACCTACAGTATAGCGATTTCTTACTCTACTTACTTGACTATGAGAGTTCAAGTTTTTCAGGAGACATGTTCTCCATGTTTCAGGTTTCCTTAAAACTTTGCTGTTTACAGTATTAAAAATATGCTAACACTTTAGATGATGGGGTGTTcgtaagactgtcatgaaacctttataataatACATGTGAAGGAGATTTTacgcatgattctaacatgaatctatgaatctacagtaactt

Function

GO:

id name namespace
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0034703 cation channel complex cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0098878 neurotransmitter receptor complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005261 cation channel activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024519 True 944 lncRNA 0.45 3 3020946 3051096

Neighbor

gene id symbol gene type direction distance location
XLOC_011843 C17H14orf132 coding downstream 75354 2902113 ~ 2945592 (-)
XLOC_011842 bdkrb1 coding downstream 186182 2833685 ~ 2834764 (-)
XLOC_011841 gpr65 coding downstream 203911 2810776 ~ 2817035 (-)
XLOC_011840 ptpn21 coding downstream 299482 2606697 ~ 2721464 (-)
XLOC_011839 zp3.2 coding downstream 430724 2587132 ~ 2590222 (-)
XLOC_011845 tmem151bb coding upstream 132180 3183276 ~ 3190070 (-)
XLOC_011846 WSCD1 coding upstream 230344 3281440 ~ 3303805 (-)
XLOC_011847 PLCB4 coding upstream 666288 3717384 ~ 3815693 (-)
XLOC_011848 NA coding upstream 772013 3823109 ~ 3829826 (-)
XLOC_011849 PLCB1 coding upstream 789916 3841012 ~ 3986236 (-)
XLOC_011835 NA non-coding downstream 584668 2430899 ~ 2436278 (-)
XLOC_011834 CABZ01058452.1 non-coding downstream 598917 2401258 ~ 2422029 (-)
XLOC_011832 CABZ01052589.1 non-coding downstream 855176 2165656 ~ 2165770 (-)
XLOC_011829 CABZ01063203.1 non-coding downstream 1096055 1915788 ~ 1924891 (-)
XLOC_011828 NA non-coding downstream 1140401 1875660 ~ 1880545 (-)
XLOC_011854 NA non-coding upstream 2091289 5142385 ~ 5143041 (-)
XLOC_011855 NA non-coding upstream 2106275 5157371 ~ 5426458 (-)
XLOC_011856 NA non-coding upstream 2401217 5452313 ~ 5564131 (-)
XLOC_011859 NA non-coding upstream 2600015 5651111 ~ 5654012 (-)
XLOC_011837 zp3.2 coding downstream 424821 2569521 ~ 2596125 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G184619 NA unknown NW_025048156.1 JAEQBD010000501.1 566643 ~ 573721 (+)