XLOC_011839 (zp3.2)


Basic Information

Item Value
gene id XLOC_011839
gene name zp3.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 2587132 ~ 2590222 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023409
ATGGAGTTCCTCCAAGGTGTATTATTACTGGCTGTGATTGCTGTGTTTGATTTTACAAGTGCACAGGGAAGTTTGAGCAATGTTCAAAGTCCAAGAGGTTTCTGGAATCTCAGAGGTGTTCCTGCTCCTCCTGGAGCCGTTTTCAGTCCTGATGTGATGGTGGCTTTCAATAGTCTTGACTCTAGGAAACCTGTGCAAGCTCCTCTCGGTCTTCAGGAGAAGCTGATGCTGCAAGCTCCTGAACCTTTCACATGGAAGTTCCCCATTGTTGCTGAAGCCCAGAGAGAGTTTGCCACAAACTTCCAGCTGAAGCAGCCTGCATCTCCTGGCAGCACTGTTGCAATTCAATGTGGTCCAGATCGGGTTCATGTTGAGGTTAAGCAGGATTTGTTTAGCAATGGAGAGTTGATCCAGCCAGCGGGTCTGTCTCTGGGAGGACGCCCTGTTGTTGGTCAGGACCCAAACTCTATGGTGCTTATCTTTGACTATCCAATTCAGGAGCCTGACAGTGTGGTGATGATGACTGAGGATGAGCTTGTCTACACCTATACTGTTACCTACACCCCTGAAGCGTTTCCTGGGACTCCTATTATCCGCACTGATGGTGCAGTTGTTGGTGTTCAGTGCCACTATCCAAGGCTTCACAATGTGAGCAGTAATGCCTTGATGCCAGCATGGACCCCTTATGCCTCAGCAGAGCTTGGCGAGGATATCTTGGTCTTCTCCCTGGATCTCATGACTGATGACTGGTCTTATCAGAGGCCCTCAAATGTGTATTTCCTGGGCAGCGTGATTAATATTGAGGCATCTGTGATGCAGTACAATCATGTGCCTCTGCGTGTGTATGTGGACCGCTGTGTGGCAACTCCAGTACCTGATCCTGAAGCTCTGCCAAGATATTCCTTCATTGAGAATCATGGGTGCTTTGTAGATGCCAAGACTACAGGTTCCAGCTCCCACTTTTTGCCTATAGTCCAAGAAGACAAGCTCCGTTTCCAGTTGGAGGCCTTCATGTTCCAGGATGCACCCAGTCCTTTTATCTACATTACATGCATTGTGAGGGCCACTGTTGCTGCCAGACATAGTGACCATCTGCACAAGTCCTGCTCCTTTGCCAATGGATGGTTTGCCAATGATGGACACCATGGAGCCTGTAACTGCTGCGACTCTACATGTGGTGTTGAAGGCCAACTTACTGGGGATGGCTTTAGAGGCATTCAGTGGGAAGGCAAGACCTTGGTTGGTCCTGTAGTGGTCAAAGACACGCAGAGGAATCTTGTTTGATAAAGTGAATGCCTGATGAATTGTGCTTGAACTCAGTTTTTAATAAATGTCTGAAACCTTATCTTTGGCTTGGTATCAAGTTTTGTGAAGCCGGTTACCTATAACTGTAGGATGAAAAACAATGGTTCAGTAGTCAAGTGGTTCATAAATAAGAGAATCAATTCTCCAAATGTTAAAACATCAAGCCTGAAAATAGCCATTGAATAAACAGTTCCTTTTTTACTTAACCTGGTTTATCTACATTGAGTTTTGTGCATTAAACCTTAAATATTTCTTTTGTAAACTCTGTTTGAACAATTAATCCCAGAAAGTTAAATTTAAAGGAAGTAATGAG

Function

symbol description
zp3.2 Predicted to enable acrosin binding activity. Predicted to be involved in binding activity of sperm to zona pellucida; egg coat formation; and positive regulation of acrosome reaction. Predicted to be located in extracellular space and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix.

GO:

id name namespace
GO:0035803 egg coat formation biological_process
GO:0007339 binding of sperm to zona pellucida biological_process
GO:2000344 positive regulation of acrosome reaction biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0035804 structural constituent of egg coat molecular_function
GO:0032190 acrosin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050626-121 Predicted to enable acrosin binding activity. Predicted to be involved in binding activity of sperm to zona pellucida; egg coat formation; and positive regulation of acrosome reaction. Predicted to be located in extracellular space and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix.

Ensembl:

ensembl_id ENSDARG00000115457

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023409 True 1618 mRNA 0.45 8 2587132 2590222

Neighbor

gene id symbol gene type direction distance location
XLOC_011838 zp3 coding downstream 2709 2580541 ~ 2584423 (-)
XLOC_011836 ccdc9b coding downstream 51450 2479303 ~ 2535682 (-)
XLOC_011835 NA coding downstream 150854 2430899 ~ 2436278 (-)
XLOC_011834 CABZ01058452.1 coding downstream 165103 2401258 ~ 2422029 (-)
XLOC_011833 PLCB2 coding downstream 200563 2348540 ~ 2386569 (-)
XLOC_011840 ptpn21 coding upstream 16475 2606697 ~ 2721464 (-)
XLOC_011841 gpr65 coding upstream 220554 2810776 ~ 2817035 (-)
XLOC_011842 bdkrb1 coding upstream 243463 2833685 ~ 2834764 (-)
XLOC_011843 C17H14orf132 coding upstream 311891 2902113 ~ 2945592 (-)
XLOC_011844 NA coding upstream 430724 3020946 ~ 3051096 (-)
XLOC_011832 CABZ01052589.1 non-coding downstream 421362 2165656 ~ 2165770 (-)
XLOC_011829 CABZ01063203.1 non-coding downstream 662241 1915788 ~ 1924891 (-)
XLOC_011828 NA non-coding downstream 706587 1875660 ~ 1880545 (-)
XLOC_011848 NA non-coding upstream 1232887 3823109 ~ 3829826 (-)
XLOC_011854 NA non-coding upstream 2552163 5142385 ~ 5143041 (-)
XLOC_011855 NA non-coding upstream 2567149 5157371 ~ 5426458 (-)
XLOC_011856 NA non-coding upstream 2862091 5452313 ~ 5564131 (-)

Expression


Co-expression Network