RNA id: TCONS_00023419


Basic Information

Item Value
RNA id TCONS_00023419
length 1080
RNA type mRNA
GC content 0.46
exon number 1
gene id XLOC_011842
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 2833685 ~ 2834764 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCAACCAGAAGAGTTTACATCATCTGTGACGCTTCATCCTCCAAACGCATCGGTCACTCCAGCGTATCTGGATTTCTTCAACTCAACAGAATGGCGACTAGTGTTTTCCATTATCCCACCATACATATTCATCGTCTGCTTGATGGGAATTCTGGGAAATTCCTTCGTATTGCTGGTATTCCTGCTCCAGAGAGGCCGATGGTCCGTCCCAGAGATCTACCTGGGAAATCTGGCACTAGCTGACCTTATTTTACTAGTCTGCTTGCCTTTTTGGGCCATGAATATCCTTAATTACTTCATGTGGCTGTATGGGGAATTCATGTGCAAGGTGGTCAACATGTCCATCATGGTCAACATGTACACGAGTATTTACATGCTAGTCATGGTGAACGTAGACCGATACCTAGCGCTCGTATTGACCATGAGAGCCCGATGGCTTCGGCGTAAAcgctatgctaagctaatctgCGTAATCCTCTGGTTGTTTGGACTGGGGATGGGCGCTCCTACTGCTGCCATGAGAAAACTGATTGACATTCCGGCTCACCAATCCGTCGAATGCATGTTGAATTATCCTAATGGGAATTGGAGAATCGCGCATCTACTGCAGCTCAACATTGTTGGATTTGCTCTGCCGTTTTTAGTCATTACGTTCTGCTGTTTTAATATCGTACGGGCTTTAAAGCGTAGACGAGACAGCGGTTATTGGGAAGACGGAAATGACCGGAAGGCTACAATCCTAGTGTGTGCCGtcacttttcttttcttcttctgctGGGGTCCGTTTCATTTCTTAACCTTCCTCGACTTGCTTTGTGATCTCAAGGTTTTGGATGAGAAGGAGTGGGCTCATTTTCTGAATATCGGAAACCAGTTTTCTGTATATTTGGCGTTCTCGAATAGCTGCTTGAACCCGGTGCTGTATGTTTGCTCAGGAAACTATTTCAGGAGGAAAGTCAGCAGCATCTATAAGAGGAGAAAACAGTCCTCAGATGCGACGACTCTACAGAGGACTGCTTTAACCTCTACGACAACCACCAATCAAATCAAGCCTGTGGTTCTGAACGAAAAAGACTAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004947 bradykinin receptor activity molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04810 Regulation of actin cytoskeleton
ko04610 Complement and coagulation cascades
ko04750 Inflammatory mediator regulation of TRP channels
ko05200 Pathways in cancer
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-030814-1 Enables bradykinin receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in brain and eye. Human ortholog(s) of this gene implicated in end stage renal disease; hypertension; and pulmonary fibrosis. Orthologous to human BDKRB1 (bradykinin receptor B1).

Ensembl:

ensembl_id ENSDART00000024027

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024809 lncRNA downstream 397407 2430899 ~ 2436278 (-) True XLOC_011835
TCONS_00023403 lncRNA downstream 411656 2401258 ~ 2422029 (-) True XLOC_011834
TCONS_00023395 lncRNA downstream 908794 1915788 ~ 1924891 (-) True XLOC_011829
TCONS_00024518 lncRNA downstream 954305 1877638 ~ 1879380 (-) True XLOC_011828
TCONS_00024517 lncRNA downstream 955194 1877638 ~ 1878491 (-) False XLOC_011828
TCONS_00024519 lncRNA upstream 186182 3020946 ~ 3051096 (-) True XLOC_011844
TCONS_00024520 lncRNA upstream 988345 3823109 ~ 3829826 (-) True XLOC_011848
TCONS_00024521 lncRNA upstream 1069916 3904680 ~ 3912731 (-) False XLOC_011849
TCONS_00024522 lncRNA upstream 1413127 4247891 ~ 4252248 (-) False XLOC_011851
TCONS_00024810 lncRNA upstream 1416138 4250902 ~ 4252232 (-) False XLOC_011851
TCONS_00023417 mRNA downstream 16650 2810776 ~ 2817035 (-) False XLOC_011841
TCONS_00023418 mRNA downstream 21693 2810976 ~ 2811992 (-) True XLOC_011841
TCONS_00023414 mRNA downstream 112221 2684992 ~ 2721464 (-) False XLOC_011840
TCONS_00023415 mRNA downstream 112221 2694034 ~ 2721464 (-) False XLOC_011840
TCONS_00023416 mRNA downstream 112349 2698080 ~ 2721336 (-) True XLOC_011840
TCONS_00023420 mRNA upstream 67349 2902113 ~ 2945592 (-) True XLOC_011843
TCONS_00023421 mRNA upstream 348512 3183276 ~ 3190070 (-) True XLOC_011845
TCONS_00023422 mRNA upstream 446676 3281440 ~ 3291369 (-) False XLOC_011846
TCONS_00023423 mRNA upstream 446676 3281440 ~ 3303805 (-) False XLOC_011846
TCONS_00023425 mRNA upstream 882620 3717384 ~ 3815693 (-) True XLOC_011847
TCONS_00023401 other downstream 667915 2165656 ~ 2165770 (-) True XLOC_011832
TCONS_00023378 other downstream 2628375 205194 ~ 205310 (-) True XLOC_011808
TCONS_00023424 other upstream 456576 3291340 ~ 3291456 (-) True XLOC_011846
TCONS_00023441 other upstream 2408576 5243340 ~ 5296561 (-) True XLOC_011855
TCONS_00023445 other upstream 2836154 5670918 ~ 5731699 (-) True XLOC_011860
TCONS_00023449 other upstream 3128211 5962975 ~ 5963065 (-) True XLOC_011866
TCONS_00023450 other upstream 3132485 5967249 ~ 5967346 (-) True XLOC_011867

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000310_00721054_00727169.mRNA True 3623 mRNA 0.42 2 CI01000310 720837 ~ 729312 (+)