RNA id: TCONS_00023428


Basic Information

Item Value
RNA id TCONS_00023428
length 1325
RNA type mRNA
GC content 0.54
exon number 2
gene id XLOC_011850
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 4227254 ~ 4231532 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCGCTCCTCACAGCGGCTCTGATGAAGGATCCTCCAAAAGACTCGCAATGGCTCGATCAAAAACGCAATATAAGCTCTCATCTCCTGGCCTGAGCCCGTCTGATCTCCTTCGTCAGTGATCTGTCCGGTTTGCAGAGATCATCATGGTCTCGTCCACCGCCGCGCTAATGGTTCTGATGGTCACTCAGGTGTTTTTTGCGGGCTCCAGTGGACTCGTTCCTCAGGTCGGCCGGTCCTCTCTGTCTCCGGACGTCCTGCACGCGTTTGAACTTCGGCTTCTGAGCATGTTTGGGCTCCAGCACAGACCCACTCCCAGCAGCTCCGCAGTGGTTCCTCAATACATGCTGGACTTGTACTCGGCGCACTCCGTGAACGCAGAGCAGGTTAGCAGACCCAGAGCTCACTTAGGGAAAGGCTCCGAGAGATCCGCCAGCAGAGCCAACACTATCAGGAGCTTCCACCATGATGAATCTACAGAAGATCTGTCCAGCTCCAGTGTTAGGACGACGCAGCGGTTCCTCTTCAACCTGACCTCCATCCCAGACGAGGAGTTGGTGACGTCAGCAGAGCTGCGCGTTTTCAGAGAGCAGATCGTGAGTTCGCTAAACAACGCAAGTGCGGGATTTCACCGCATTAACGTTCACGAAATCATCAGGCCGTCCGGTTCTCTTCAGGAGCCCATCACTAGACTCTTGGACACCAGGCTTGTTCAACACAGCTTGAGCAAATGGGAGAGCTTTGACGTAACTCCTGCTGTATTAAAGTGGACCACAGACGGACACCCTAACCATGGGATATTGGTGGAAATATCACACCCAGATCAAGACTCCAGAAAACATGTGCGCGTAAGTCGGTCCCTTCACAACAATGAGGACACGTGGTCTCAAATGAGGCCGCTTTTGGTGACCTACAGCCACGATGGAAAGGGAAACGTGCTGCATTCTCGTGAAAAACGACAAGCGAGGAATAATAAGCAGAGAAAGAAGCATAAAGCAAACTGCAGGAGACATTCCCTGTACGTGGACTTCAGCGACGTAGGCTGGAATGACTGGATTGTGGCGCCGCCGGGTTACCATGCATTCTACTGCCAGGGCGAGTGCCCGTTTCCACTGGCGGACCACTTGAACTCCACTAACCACGCTATCGTGCAGACACTGGTGAACTCGGTGAACAGCAACATTCCCCGAGCCTGCTGCGTGCCCACTGACCTCAGTCCGGTTTCTCTGCTATATCTGGACGAGTACGAGCGGGTCATCTTAAAAAACTACCAGGACATGGTGGTGGAGGGATGCGGGTGCCGCTGACGCCACCCCCTGACACTTTA

Function

GO:

id name namespace
GO:0060395 SMAD protein signal transduction biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0030513 positive regulation of BMP signaling pathway biological_process
GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0070700 BMP receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-388 Predicted to enable BMP receptor binding activity and cytokine activity. Acts upstream of or within positive regulation of BMP signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including digestive system; fin; fin bud; mesoderm; and visual system. Human ortholog(s) of this gene implicated in bone disease (multiple); hemochromatosis type 1; otosclerosis; prostate cancer; and tooth agenesis. Orthologous to human BMP2 (bone morphogenetic protein 2).

Ensembl:

ensembl_id ENSDART00000019364

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024521 lncRNA downstream 314523 3904680 ~ 3912731 (-) False XLOC_011849
TCONS_00024520 lncRNA downstream 397428 3823109 ~ 3829826 (-) True XLOC_011848
TCONS_00024519 lncRNA downstream 1176158 3020946 ~ 3051096 (-) True XLOC_011844
TCONS_00024809 lncRNA downstream 1790976 2430899 ~ 2436278 (-) True XLOC_011835
TCONS_00023403 lncRNA downstream 1805225 2401258 ~ 2422029 (-) True XLOC_011834
TCONS_00024522 lncRNA upstream 16359 4247891 ~ 4252248 (-) False XLOC_011851
TCONS_00024810 lncRNA upstream 19370 4250902 ~ 4252232 (-) False XLOC_011851
TCONS_00024811 lncRNA upstream 20047 4251579 ~ 4252232 (-) True XLOC_011851
TCONS_00024523 lncRNA upstream 910853 5142385 ~ 5143041 (-) True XLOC_011854
TCONS_00024812 lncRNA upstream 925839 5157371 ~ 5161030 (-) False XLOC_011855
TCONS_00023426 mRNA downstream 241018 3841012 ~ 3986236 (-) False XLOC_011849
TCONS_00023427 mRNA downstream 241018 3986138 ~ 3986236 (-) True XLOC_011849
TCONS_00023425 mRNA downstream 411561 3717384 ~ 3815693 (-) True XLOC_011847
TCONS_00023423 mRNA downstream 923449 3281440 ~ 3303805 (-) False XLOC_011846
TCONS_00023422 mRNA downstream 935885 3281440 ~ 3291369 (-) False XLOC_011846
TCONS_00023429 mRNA upstream 7905 4239437 ~ 4245311 (-) False XLOC_011851
TCONS_00023430 mRNA upstream 8139 4239671 ~ 4245902 (-) False XLOC_011851
TCONS_00023431 mRNA upstream 8607 4240139 ~ 4252221 (-) False XLOC_011851
TCONS_00023432 mRNA upstream 65544 4297076 ~ 4318393 (-) False XLOC_011852
TCONS_00023433 mRNA upstream 75608 4307140 ~ 4318428 (-) True XLOC_011852
TCONS_00023424 other downstream 935798 3291340 ~ 3291456 (-) True XLOC_011846
TCONS_00023401 other downstream 2061484 2165656 ~ 2165770 (-) True XLOC_011832
TCONS_00023378 other downstream 4021944 205194 ~ 205310 (-) True XLOC_011808
TCONS_00023441 other upstream 1011808 5243340 ~ 5296561 (-) True XLOC_011855
TCONS_00023445 other upstream 1439386 5670918 ~ 5731699 (-) True XLOC_011860
TCONS_00023449 other upstream 1731443 5962975 ~ 5963065 (-) True XLOC_011866
TCONS_00023450 other upstream 1735717 5967249 ~ 5967346 (-) True XLOC_011867
TCONS_00023451 other upstream 1782023 6013555 ~ 6013671 (-) True XLOC_011868

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000310_00593564_00595487.mRNA True 1658 mRNA 0.53 2 CI01000310 593526 ~ 595937 (-)