RNA id: TCONS_00024523


Basic Information

Item Value
RNA id TCONS_00024523
length 587
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_011854
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 5142385 ~ 5143041 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATCTGCTGTTTCTCAGGGACGTCACTTCGCTGCGTTTGGACTGCGGAGACAAGCTGAAATCCCAGATCTGGATGCTCTCCATCAGGGACCCAATAAAGGCTTGAGTAATGAATGGAGTCCTTCCTGCACCAGACTTTTATTAGGCTGAGCTCAAATGCACCAACTCTCACCGTGACTTTCCAGCGCGCTCCGTCAATTTTAATGTTCAGCAGACTCCATGTCTCCTGACAACGGTTGCCAGATATTAACCGCACAGTTTGCGCAGATGCATGAAGAAACGTCGTCTCCAGTTGCGTCTAGCCTGTTGGATCAGGAGCGTCATCATGATATCATCGCAATCATCTGGGCAACAGGACACGGCGTCTACATCcaatgctttttctcaaagcgaaGTGAGCAATATAATTTCTTGAACATTCCCATTTGATGTTGTTGAGGTCATGATTATGACTAGTGTCTTTAAATGGCGGCTCGGCTCTGAAACACAAAGCAGATTCTTGCAACAAGCTCATAAATCATCAGGGAAAGGTATTGACTAATATGGAGTCTCAAAGGGGGGCAGAAAGGCGCTTGGGAAAAGTTGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024522 lncRNA downstream 890137 4247891 ~ 4252248 (-) False XLOC_011851
TCONS_00024810 lncRNA downstream 890153 4250902 ~ 4252232 (-) False XLOC_011851
TCONS_00024811 lncRNA downstream 890153 4251579 ~ 4252232 (-) True XLOC_011851
TCONS_00024521 lncRNA downstream 1229654 3904680 ~ 3912731 (-) False XLOC_011849
TCONS_00024520 lncRNA downstream 1312559 3823109 ~ 3829826 (-) True XLOC_011848
TCONS_00024812 lncRNA upstream 14330 5157371 ~ 5161030 (-) False XLOC_011855
TCONS_00024813 lncRNA upstream 309272 5452313 ~ 5564119 (-) False XLOC_011856
TCONS_00024814 lncRNA upstream 338808 5481849 ~ 5564131 (-) True XLOC_011856
TCONS_00024815 lncRNA upstream 508070 5651111 ~ 5653836 (-) False XLOC_011859
TCONS_00024816 lncRNA upstream 508070 5651111 ~ 5654012 (-) True XLOC_011859
TCONS_00023435 mRNA downstream 745693 4386649 ~ 4396692 (-) False XLOC_011853
TCONS_00023434 mRNA downstream 745693 4386649 ~ 4396692 (-) False XLOC_011853
TCONS_00023436 mRNA downstream 747012 4386682 ~ 4395373 (-) True XLOC_011853
TCONS_00023433 mRNA downstream 823957 4307140 ~ 4318428 (-) True XLOC_011852
TCONS_00023432 mRNA downstream 823992 4297076 ~ 4318393 (-) False XLOC_011852
TCONS_00023437 mRNA upstream 15398 5158439 ~ 5424253 (-) False XLOC_011855
TCONS_00023438 mRNA upstream 19101 5162142 ~ 5426458 (-) False XLOC_011855
TCONS_00023439 mRNA upstream 78290 5221331 ~ 5352924 (-) False XLOC_011855
TCONS_00023440 mRNA upstream 78290 5221331 ~ 5424175 (-) False XLOC_011855
TCONS_00023442 mRNA upstream 423097 5566138 ~ 5583345 (-) True XLOC_011857
TCONS_00023424 other downstream 1850929 3291340 ~ 3291456 (-) True XLOC_011846
TCONS_00023401 other downstream 2976615 2165656 ~ 2165770 (-) True XLOC_011832
TCONS_00023378 other downstream 4937075 205194 ~ 205310 (-) True XLOC_011808
TCONS_00023441 other upstream 100299 5243340 ~ 5296561 (-) True XLOC_011855
TCONS_00023445 other upstream 527877 5670918 ~ 5731699 (-) True XLOC_011860
TCONS_00023449 other upstream 819934 5962975 ~ 5963065 (-) True XLOC_011866
TCONS_00023450 other upstream 824208 5967249 ~ 5967346 (-) True XLOC_011867
TCONS_00023451 other upstream 870514 6013555 ~ 6013671 (-) True XLOC_011868

Expression Profile

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