RNA id: TCONS_00024812


Basic Information

Item Value
RNA id TCONS_00024812
length 3660
lncRNA type sense_over
GC content 0.38
exon number 1
gene id XLOC_011855
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 5157371 ~ 5426458 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTAGTTTGCTTTTTGCTTGCTCATTGTTTTGTGTTTGCTATGTTGGTTGACTGTGTGTTTTGCTGGATGGCTGGATTATGTGACCGTTTCTTGTGCTATGCGTGTTATAATCATTTGTGCTGAAATCGATCTTTAAAAGTGTTCTAATTGTGTTTTCTCTCTGATTACCAGATATACGAGATCCATGGGATTCGAGTAACAGGGTAGATGTCACGTGACCTACATGTTGCTACACGTGGGAGATACCAATGTGTTTACACACTAGTTTAGAAGTGTGCGCCACTAATTGTAAGTTTTGTTTACGTTTGCGTTTAGAAGTGTAGTTTAGATAGGGCGAGAAAacgctgaagacttttctttctctttcttttattaGGTAGTATAGAGATTGAGGGTTCTAGTTagagttgtgttttgttatattattttcttttctttggcgCCACTTTTGTTCCTCCTCCCCTTTATTAcaaccatttatttattcttgttttctttattttatatattctttttttcagttatccactttgtaaataaacacttaatttgGTTGTTTGTCTGCTCTATTGCCGCCACCATTCATAAAGAGTCATGAGTTTTAAATGTTGTGTTAACCCTAGCGTTTCCATCTTAAATAACCGTAACACAGTTACTTTCCTAATACCATTGGAATACTTCGGGTGATGCATGTCTGGCCCATAATAATATGACTAAATTGCAGCCGAAACCATAGAAAAAGAAGCTACACTCCCGACTGCAAACACCAGCGTTAACTCAGTGAGACTCACGCCAATGACCCTGTTTTCATGCTCTCACGCCACACCTCCATTTTCTCACGCAGCAAAAAGGATGATCGCAAACACCGAACAACCAGACAACAACCATGATTTTCAAATAAACTGCTTTTTTTGTCGTCATTGTTCGTGAATTCGCTGCTTGATGTTTCGTTTACGCTTTCAGAGGTTTCGTTTACGCTTCTTAAATTTACGTTCGCTTTTCTGACACAAATGTGGGCGGGACTTATGGGCACCTCAGCCAAAGTTGGCAGCCCTGGTTAACTAGAGTGTACAAATATGGAGGATTCAGACCAGGAGCTCGAGGGGTTCGAGCCGCAGCCGAAGCAACTTTCTGTTACAGCCTGTCACATACTTTGGTTTTACATAAACTATTTtgaagtttttcttttctttaatagACTTAAAGGCTGATTAAAAGGGAAGTATTCCAAGTATTTAGAATACAATACCAAGATTAAGCAAAGTAACGAAATAAGTTACACAATACAATTTAAAGCAGGTATTCTGTACTCTGtaactaaatacatttacaaagtatTCTCCCCGACACTGGTGAGGACTAAACACTgatgtgtgtgtttcctctgttAACTCGTCTGTCTTCATCTCTGCTTCAGTTTAATCCACTCTCATGTCTTCATCTGTTGACCTGTTGCCTTTAAACAGATAATACTGATGTCCTGTCTCAAAAGCCTTTAAAGCTCTCACATTTTTCTGTCAGCACCTTGTAAACGTCCCGCAGTAAAAGCCCTGTATGATATTTCAAGGTGTTCCCCGTGAGCCGGACGCACTGATGTTGTAGATCCTCGTAAATCCCACAGCTTTTCTCACAGGAGATGGACAGAGATTTATGAAGGTATCTGACAGCCTgtcttttatttccttttattattcacacacacacacacacacacacacacacacacacacacactcgcttgTGTCTGCTTACTAAGTTAAGCTTTCAGCAGTCATCTGAAGGctctaacacagacacacacacacacacacacacacacacacacacacacactgtatcttCTTCAGGTCAGATTTAACATTGCACATTTTTGTGATATTGGAGATTGAACATTGATCCTGACTGATATTCACATTCTCTAaacaaactgttttatttataggATGCTTATTTGGGACAATATGTCTGTTAAGGTTTTTGAATgtgtattttacttatttatttatatacactctaaaaaacgttgagttatttatttaacctaatggttgagttaaaaatatttgttgcttagttgggttattttttacctatattgggttatttattaatatctcaaccagttgggttaaactTTTTGAcgtctgctaatgagctgatgatctgaatcaggtgttgtttggtttaggaaagtggttgagaaacactgcactagaGGGTGTGCATTCACAACGAACCAAGGTGTATTTTGATGATGATGTCTGTTTGAACATTCTTCAACACATTTGGGACAATGTAAGTACGCAATaaataagtcagcaaaatatataacactgttatagtgttttttatatatatatatatttaaatgaaaaattgtaCATATTGCGTCTTTTAAAGTTGTATTTCTCTCTTTACTGTTTGTGAATTGTCTTGTTTCCGCTGTTTTTGCTGTGAACATGGCTGTGGTTCAGCACACGATCTGCCTTTATGAGCCACTTCTGGAAAACTCAGTCCCCGATCGGCTGCTGTCTGTCACAGCTTGTGTGTTTTCAGGAGCAGATCCGGGGCTCGTCAGGTCATCTCTGAGGTGAGTTATAGCTGAGCACTCCACACACGGACAATCTGCCAAAGCAATGCAAAAGCAGCCTGATCCTCATTCCAGATCACAGTGGAAGAGAAACAATAGCGTGATTCAGCGGAAGAGATTAGTTTGCATTGATCTCATCGGGGAaacaactattttacgttttgtcagtttaatggctaattcagGTTCagttatacaaaaaaaattatattaaggcAATGGAAATGTAATGCACGATATTTAAAAGGAGGCATAGCACCTAAACCCAGCCCTCATTTGGAcgaggcaaggcaagtttatttatatagcacatttcatacacagtggcaattcaaagtgctttgcaTAGACCTGTTATTCCTGAGAgtcaagtataagaaaataaaaacaaatgaaaaaagtgattaaaataatgaaaaagaaatatatatatttaaacacacaaaataaacacatttgcaTGGCCGTGAGCTCACAAGCAACACTCTTTCAAAAAACGTAAAAGTCTGTGGTTGCAATTATTCATGATAACATCTGattgcaatacattatgaatgtTGTAGTAATGCATTATGTACACAATCTTCACAGaacattaaatatgtaatttgcaAATGTGTTTAGTGTAGTAACACAATCTCTCCAGGATTTCGGTCTGATATTGCTTGTTTATAAATATGAAATCATAAGCACCTGCTTTACATCATGTTCCCCATTCACAAATTACATTTCTTCCGTAAACCTTTCACCAAACAAGCCAAGCAGATCCTCTCTATCCCAAACCTGAAGCCTTTATGGGGATCAACCGCAAGTAAAACGAAGCAAACCCTGTTATTTAAGCTCAATAAAGCCACATATTGTGCGTTTGCAGTGTTGAGCAACTGTTTATTATTCGTATATTTCTGCCAGATGTATTGCATTAGCAGATGTTCAGACCTGTTTTCTAGTGGTCGCAGTTCAGCAGAAGTTTGAGCTTTTACTGTGATATGACAataaacaatcattcattcattttcttgtcggcttagtccctttattaatctggggtcgccacagcggaatgaaccg

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0007049 cell cycle biological_process
GO:0007076 mitotic chromosome condensation biological_process
GO:0051301 cell division biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000796 condensin complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024523 lncRNA downstream 14330 5142385 ~ 5143041 (-) True XLOC_011854
TCONS_00024522 lncRNA downstream 905123 4247891 ~ 4252248 (-) False XLOC_011851
TCONS_00024810 lncRNA downstream 905139 4250902 ~ 4252232 (-) False XLOC_011851
TCONS_00024811 lncRNA downstream 905139 4251579 ~ 4252232 (-) True XLOC_011851
TCONS_00024521 lncRNA downstream 1244640 3904680 ~ 3912731 (-) False XLOC_011849
TCONS_00024813 lncRNA upstream 291283 5452313 ~ 5564119 (-) False XLOC_011856
TCONS_00024814 lncRNA upstream 320819 5481849 ~ 5564131 (-) True XLOC_011856
TCONS_00024815 lncRNA upstream 490081 5651111 ~ 5653836 (-) False XLOC_011859
TCONS_00024816 lncRNA upstream 490081 5651111 ~ 5654012 (-) True XLOC_011859
TCONS_00024524 lncRNA upstream 720047 5881077 ~ 5884928 (-) True XLOC_011864
TCONS_00023435 mRNA downstream 760679 4386649 ~ 4396692 (-) False XLOC_011853
TCONS_00023434 mRNA downstream 760679 4386649 ~ 4396692 (-) False XLOC_011853
TCONS_00023436 mRNA downstream 761998 4386682 ~ 4395373 (-) True XLOC_011853
TCONS_00023433 mRNA downstream 838943 4307140 ~ 4318428 (-) True XLOC_011852
TCONS_00023432 mRNA downstream 838978 4297076 ~ 4318393 (-) False XLOC_011852
TCONS_00023438 mRNA upstream 1112 5162142 ~ 5426458 (-) False XLOC_011855
TCONS_00023439 mRNA upstream 60301 5221331 ~ 5352924 (-) False XLOC_011855
TCONS_00023440 mRNA upstream 60301 5221331 ~ 5424175 (-) False XLOC_011855
TCONS_00023442 mRNA upstream 405108 5566138 ~ 5583345 (-) True XLOC_011857
TCONS_00023443 mRNA upstream 437984 5599014 ~ 5610514 (-) True XLOC_011858
TCONS_00023424 other downstream 1865915 3291340 ~ 3291456 (-) True XLOC_011846
TCONS_00023401 other downstream 2991601 2165656 ~ 2165770 (-) True XLOC_011832
TCONS_00023378 other downstream 4952061 205194 ~ 205310 (-) True XLOC_011808
TCONS_00023441 other upstream 82310 5243340 ~ 5296561 (-) True XLOC_011855
TCONS_00023445 other upstream 509888 5670918 ~ 5731699 (-) True XLOC_011860
TCONS_00023449 other upstream 801945 5962975 ~ 5963065 (-) True XLOC_011866
TCONS_00023450 other upstream 806219 5967249 ~ 5967346 (-) True XLOC_011867
TCONS_00023451 other upstream 852525 6013555 ~ 6013671 (-) True XLOC_011868

Expression Profile

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