RNA id: CI01000093_01042275_01068202.mRNA


Basic Information

Item Value
RNA id CI01000093_01042275_01068202.mRNA
length 1865
RNA type mRNA
GC content 0.41
exon number 10
gene id CI01000093_01042275_01068202
representative False

Chromosome Information

Item Value
chromosome id CI01000093
NCBI id null
chromosome length 1475560
location 1041650 ~ 1068202 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTCATGTGAACCTTCAGTGTGGTTCTCATTCCGATGCTGATGTTGCTCTGCACTTTAACCCTCGCTGGGAGAGCACTGGGTATGTAGTGAACAACACCTACCAGAACAGGAACTGGGGCTCAGAGGAACGCAATTCGCGTGCACCCAGTCCCAACCGTGCCAATCAAGCAGCACCTGAGGACAAAAGAGAGAGAAGCCCCCATTCACAGCCTTGTAGGGTGCTTCCTCAGTGGAAGAGGGGAAAGCGGCGTACTGCTGGCACACTTGTTTTTCCTGGAACATCTGGAAGCATGAGAGTGTGGAGTCACACTAAGCAGGTCTTTGCAGCTGGCTACAGGCATAACACTCAAAGTGTTATCGGCCTTTATCCTTGTTTGCATTTTAGTTTTCTGGCAGACAATATTCCAGGGGGGCTTGCAGGAAGGGAAGAGCATCATCGTGAGTGGAACGGTTTTGCCAAATGCCAACAGGAGTATTATAGTGGCATGGCTAGTTTTGTGTACAGTTTTCATTCTGTGTTGTACAGAGTTCATGTGAACCTTGAGTGTGGTGATGATATTGCTCTGCACTTTAACCCACGCTATGATGGTGGCCCTGCATATGTGGTGTTAAACACTCTTCAAAAGGGTAACTGGGGCACAGAGGAACACAAGTATGAATCTCCCATTCTTCAAGGCAAACCACTCATCCTGCAGATACTTGTGACCAAACAGACATACAAGATAAGTGTCAACGGGAAACACTTCATGGACTACAAACACCGTATTCCTATCACTGGGGTGAAAAGTATGTTTGTGAATGATATGGTGAATCTGGATTTCATTGCCTACCAGAAGCCTGAGGTGGTCCCATACAAAACCTTGTTCAAAAATGGACTACAGCCTGGCAAAGACATTGTCATTTATGGACTTCCTAACCCTGACTGTAAAAGGATCGAGATGAATTTCCGTCACAAATATGGGATTGCATTTCACTACCTATCCTATTTTGATGCGAATGTGGTTGTCCGCAACACCTTTGAGAACGGGGCGTGGGGAAAAGAAGAAAGGAGTGGAGGTGTGCCTTTTAAAAAAGATGAACTCTTTAAGGTCACCATCTCCTGCGATAAAGACCAGTTCACTGTGTTTGTGAATGACCAGCAAGCACATACTTACAAGCATCGCTTTGCTAAACTGGAGGACATTGACGTCTTTGAAATTTATGGAGACTTGCAACTGATTTTTGTGAAACCCTTATAAGGATCCAGGTTTATAGGAAGTGCATATTTAAAACTTCCCCTAATGAGTTATCATATGCTTAAAAAATATAACAAAGTGCTAGATTATTTACAAATTGTAGTCGATTAGTGATTCCACATTACCTAACAAAAATTGTACATTTAAGGTAATGTAATTGGACTACTTTTGGATACTTGGATACATTTTTTAAATTAAAATAAATAATTTTAAAATTAAAACAATCAAAATAAAACGCTTTCTAAAAAGATTAAATATTTTGTTTTGCTGCATGTCATGTGATCATTAACCGACATCAGAGAACCAAAAGGCTTGTTCAAGATGAACTACACTAGCCTTCCACCAGCTGGCGAGATCTGCCCATTGCAGGCGGGGGAGGAGTACAGAGATGGCTTTCAGGTCCAAGTAGCACTTTGTGCCTTCCATAATGTGCTGAACTAACATCATTCATGGCAGACCACACAATTTTTGCATTGATTGCAGCCGAAGAAGTGGATGCAACTGAAATAAGAATGCATACTTGCTAGATAGCTTAATCTTAATTTATGTTAATGTTTTGTGTGTTTTGTTTGAATATCAGATATTCAGTATCAACATTGGTTAAAGGAAAAAAAGGGGGGAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU349690 lncRNA downstream 143283 897958 ~ 898367 (-) True G307738
TU349469 lncRNA downstream 187798 780328 ~ 853852 (-) True G307550
TU349473 lncRNA downstream 206988 823658 ~ 834662 (-) True G307554
TU349502 lncRNA downstream 218592 820408 ~ 823058 (-) True CI01000093_00777884_00821939
TU349474 lncRNA downstream 277953 747449 ~ 763697 (-) True G307555
TU349705 lncRNA upstream 764 1068966 ~ 1070452 (-) True G307753
TU349709 lncRNA upstream 60676 1128878 ~ 1129105 (-) True G307757
TU349506 lncRNA upstream 116708 1184910 ~ 1192058 (-) True G307587
TU349482 lncRNA upstream 136173 1204375 ~ 1204759 (-) True G307563
TU349733 lncRNA upstream 165881 1234083 ~ 1234697 (-) True CI01000093_01231795_01232733
CI01000093_01024056_01030224.mRNA mRNA downstream 11312 1022996 ~ 1030338 (-) True CI01000093_01024056_01030224
CI01000093_00929066_00991259.mRNA mRNA downstream 50391 929066 ~ 991259 (-) True CI01000093_00929066_00991259
CI01000093_00906831_00917953.mRNA mRNA downstream 122920 906486 ~ 918730 (-) True CI01000093_00906831_00917953
CI01000093_00885214_00889462.mRNA mRNA downstream 152076 884976 ~ 889574 (-) True CI01000093_00885214_00889462
CI01000093_00841300_00846650.mRNA mRNA downstream 194523 840913 ~ 847127 (-) False CI01000093_00841300_00846650
CI01000093_01082814_01125194.mRNA mRNA upstream 13336 1081538 ~ 1125536 (-) True CI01000093_01082814_01125194
CI01000093_01136960_01147480.mRNA mRNA upstream 68758 1136960 ~ 1147480 (-) True CI01000093_01136960_01147480
CI01000093_01155146_01166220.mRNA mRNA upstream 86576 1154778 ~ 1166220 (-) True CI01000093_01155146_01166220
CI01000093_01189004_01193556.mRNA mRNA upstream 120345 1188547 ~ 1193673 (-) True CI01000093_01189004_01193556
CI01000093_01208954_01210829.mRNA mRNA upstream 140735 1208937 ~ 1210829 (-) True CI01000093_01208954_01210829

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018352 True 1065 mRNA 0.42 7 NC_007126.7 31022014 ~ 31027112 (-)