RNA id: TU349383


Basic Information

Item Value
RNA id TU349383
length 345
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G307488
representative True

Chromosome Information

Item Value
chromosome id CI01000093
NCBI id null
chromosome length 1475560
location 131931 ~ 132275 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGGCTTTTTATGTTTTTAATTAATTTATGAAGCCACTGTAAACGTTATCGTTACATATTATATTGTTATATATTATAATGCTACCATATTTTGGGCCGGCAATTAGCTTACTGTGTTGTAGAAAAGCCTGACAATGTCACTGCTAAATACCTATAATATTGTGGTATTCCGCAGTGTTTCTCACTGACACGCCACCAACTCGTAAAGATCGGGGCTTAAAGAAAATCCTGAACTTCCCACTCGTATTTACAACATTGTGGTGATGTTCATGTGCGTTCAGCTCATAAATACGATATAACTTTGACATAACTTTCACAGACCATTAGTTGCTCCTAACCTATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU349382 lncRNA downstream 116 131588 ~ 131815 (-) True G307487
TU349381 lncRNA downstream 360 131304 ~ 131571 (-) True G307486
TU349341 lncRNA downstream 68625 63050 ~ 63306 (-) True G307449
TU349320 lncRNA downstream 86212 44014 ~ 45719 (-) True CI01000093_00044285_00045637
TU349323 lncRNA downstream 116626 13323 ~ 15305 (-) True G307432
TU349385 lncRNA upstream 3155 135430 ~ 135668 (-) True G307490
TU349389 lncRNA upstream 7827 140102 ~ 140431 (-) True G307494
TU349404 lncRNA upstream 14159 146434 ~ 156389 (-) False G307499
TU349400 lncRNA upstream 17303 149578 ~ 156347 (-) True G307499
TU349426 lncRNA upstream 52999 185274 ~ 185571 (-) True G307518
CI01000093_00044285_00045637.mRNA mRNA downstream 86279 44016 ~ 45652 (-) False CI01000093_00044285_00045637
CI01000093_00021721_00029528.mRNA mRNA downstream 102403 21721 ~ 29528 (-) True CI01000093_00021721_00029528
CI01000093_00000644_00001222.mRNA mRNA downstream 130709 469 ~ 1222 (-) True CI01000093_00000644_00001222
CI01000093_00224221_00233968.mRNA mRNA upstream 91590 223865 ~ 236442 (-) True CI01000093_00224221_00233968
CI01000093_00372074_00372877.mRNA mRNA upstream 239520 371795 ~ 373025 (-) True CI01000093_00372074_00372877
CI01000093_00441786_00443029.mRNA mRNA upstream 309093 441368 ~ 443590 (-) True CI01000093_00441786_00443029
CI01000093_00601248_00607534.mRNA mRNA upstream 468810 601085 ~ 607729 (-) True CI01000093_00601248_00607534
CI01000093_00633602_00642455.mRNA mRNA upstream 499351 631626 ~ 642522 (-) True CI01000093_00633602_00642455
TU349703 other upstream 935744 1073022 ~ 1073753 (-) True G307751

Expression Profile