RNA id: TCONS_00001417


Basic Information

Item Value
RNA id TCONS_00001417
length 1472
RNA type mRNA
GC content 0.62
exon number 7
gene id XLOC_000903
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 39313 ~ 44565 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCTGAGGCcgtaaacaacaaacaaacaaccgaGTAAACAAACAACGAGCTCCGGCGCAGACCCGCGGGCAGAGTGAGGAGCTCCGCCGCGCAGCAGATGCAGAGAGCGGCGTGTGGAGGAGCTGATGCCCGCTGATGCTGCTCCATGATCGtgtCCGCGGCGTGAGGTCGAGGGCTCCGAGATGCCCGGGGGCCGCAGGGGCCCCAGTAGACAGCAGCTGAGCCGCTCCGCGCTGCCGTCGCTGCAGACACTGGTGGGCGGCGGCCTGAGCAATGGGGCGGGGCTTCGATGCAGgagCAGCAGTGCGGTGGGTCTGTCAGCTCCGCCCCTCACCGCCCTCATCACCCCTGAGCCGGTCCGTCACTCCCGCATCCCGGATCTCCCTCTGGACAGTAACCTGCTGTTCGAGACGCTGCTGCTCCTCTACCTGCTGGTGGCGCTGTTGGTCCAGTACATCAACATCTACAGGACGGTGTGGTGGTCCTCCTACAGCCAGCCCACCGCCTCCACGTCactgAACTTCCACCTGATGGACGCTCACCTGGCCGTGTTCATCGCAAGGCTGGAGCCCGGATCCTGCAGCAACACCCCGCAGCACAcctggtCCGACAGCACCATCTGGCCGCAGGGAGTTCTGGTCCGCCACAGCCGCTGCCTGTATAAAGCCGTCGGCCCGTATAACGTGGCTCTGCCCTCCGACGTCTCGCACGCACGCTTCTACttccTCTTCCACAAGCCACTGCGGCTGCTGAATGTGCTGATCGGGATCGAGTGCAGTGTGGTTGTGTATCAGCTGTACTCTCTGCTGCGCTCTGAGCGCTGGAATCACACGCTCTCGCTCGGCCTGATCCTCGTCTGCAATTATTACGTGCTCTTCAAGCTGCTGCGCGACCGGCTGGTGCTGGGCAAGGCGTACTCGCACCCGCTGGGCAGCGCCGGCCTGGGCATGAAGAGAGACTGACCCCCCCGCCGCCGCCGCTCCGTCTGTGTAGGGGACGCTTCCTCTGCGCCGCTACACCACCGCTCACCCAGAGCCAGCCAAAGACtgaatctgaccaatcacagagcagcGCTGGGCAGGGGGGCGGTCCGGCTCGCTCTGCCGCCTCTCCTGAGTGTTCCTCCAGCGTCCGCCTGCAGATTCAGACCGGCCGGACATCTCGCTCCCTACTCTGTGCCAAACCCCAGGGGCGTGGCCTCGTGTAAGGGTGGGGCTCTTTGGACTCTGGGCGGAGCCTGTGACGGTCCAGCTTACAGTATTTTACTAAACGTCTGCATTTCACACAACCaaagggaggaggaggaggagtgatGAAGCAGACCTGcggatcatcacacacacacacacacacacacacacacacacacactgccttgATGCGCAGGCTCCGCCCCCTGCGCTGTGTGTTTTATACAGGACTGATTGTGCttaattattaaaactctttttttatgcTTTTCTGGGTCAAA

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:1902902 negative regulation of autophagosome assembly biological_process
GO:1901097 negative regulation of autophagosome maturation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1928 Predicted to be involved in negative regulation of autophagosome assembly and negative regulation of autophagosome maturation. Predicted to act upstream of or within autophagy. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human TMEM39A (transmembrane protein 39A).

Ensembl:

ensembl_id ENSDART00000171547

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001416 lncRNA downstream 27588 6642 ~ 11725 (-) True XLOC_000902
TCONS_00001415 lncRNA downstream 29394 6642 ~ 9919 (-) False XLOC_000902
TCONS_00001414 lncRNA downstream 31978 6642 ~ 7335 (-) False XLOC_000902
TCONS_00001427 lncRNA upstream 2936 47420 ~ 48077 (-) False XLOC_000904
TCONS_00003284 lncRNA upstream 2936 47420 ~ 49842 (-) False XLOC_000904
TCONS_00001428 lncRNA upstream 3336 47820 ~ 49695 (-) False XLOC_000904
TCONS_00001430 lncRNA upstream 4393 48877 ~ 49842 (-) True XLOC_000904
TCONS_00001433 lncRNA upstream 21221 65705 ~ 71494 (-) False XLOC_000906
TCONS_00001413 mRNA downstream 27286 6408 ~ 12027 (-) False XLOC_000902
TCONS_00001425 mRNA upstream 355 44839 ~ 50247 (-) False XLOC_000904
TCONS_00001426 mRNA upstream 1553 46037 ~ 48933 (-) False XLOC_000904
TCONS_00001431 mRNA upstream 16495 60979 ~ 64829 (-) False XLOC_000905
TCONS_00001432 mRNA upstream 16503 60987 ~ 65017 (-) True XLOC_000905
TCONS_00001435 mRNA upstream 21221 65705 ~ 71523 (-) False XLOC_000906
TCONS_00001429 other upstream 3470 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001442 other upstream 108754 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001460 other upstream 423259 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001476 other upstream 576541 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001485 other upstream 1006457 1050941 ~ 1051057 (-) True XLOC_000930

Expression Profile

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