RNA id: TCONS_00001431


Basic Information

Item Value
RNA id TCONS_00001431
length 537
RNA type mRNA
GC content 0.60
exon number 3
gene id XLOC_000905
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 60979 ~ 65017 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCCGAGAGAACACACCGATTTCTGGTGCTGTCGGTGCTCAGATGCTGGATCTCCCTGCTGGGCTTTACAGCGGTGCAGGTGTCGGTGCGGGACTCTCGCCGGTTCGCCCTGCTTTTCCAGCCAGTAGTGCTGCAGTGCCGGTACAGCAGTGTGTCCACGCAGACGCCGGTGGTGCAGTGGTGGTTTAAGTCTTTCTGCCGCGACCGCGCACGAGACTCCTTCCGCTTCCCACAAGCGCCGccagtgcgcacacacacactcacacactctgaACTCGAGCATGAGCCCTCTGGTCAGCGGGACTGCGGGGACAGCGGCCGCACCGTGCGCATTGTGGCGTCAAGTCAGGGGCCGGCATACACCCTGGCGGAACACTACCGGGGCCGAGACATCGCCATCATCAACAaagCTGACCTGCGCATTGGCGAGCTGCAGTGGGGTGACAGTGGTGTTTATTATTGTAAAGTGGTGATTTCGGATGATCTGGAGGGACAGAATGAAGACCACGTGGAGCTGCTGGTTCTGGGTGAGTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000180269

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003284 lncRNA downstream 11137 47420 ~ 49842 (-) False XLOC_000904
TCONS_00001430 lncRNA downstream 11137 48877 ~ 49842 (-) True XLOC_000904
TCONS_00001428 lncRNA downstream 11284 47820 ~ 49695 (-) False XLOC_000904
TCONS_00001427 lncRNA downstream 12902 47420 ~ 48077 (-) False XLOC_000904
TCONS_00003283 lncRNA downstream 16433 42040 ~ 44546 (-) False XLOC_000903
TCONS_00001433 lncRNA upstream 876 65705 ~ 71494 (-) False XLOC_000906
TCONS_00001438 lncRNA upstream 3061 67890 ~ 71472 (-) True XLOC_000906
TCONS_00001439 lncRNA upstream 43456 108285 ~ 110804 (-) False XLOC_000907
TCONS_00003285 lncRNA upstream 43456 108285 ~ 147846 (-) True XLOC_000907
TCONS_00003286 lncRNA upstream 76460 141289 ~ 142119 (-) True XLOC_000908
TCONS_00001425 mRNA downstream 10732 44839 ~ 50247 (-) False XLOC_000904
TCONS_00001426 mRNA downstream 12046 46037 ~ 48933 (-) False XLOC_000904
TCONS_00001418 mRNA downstream 16414 39325 ~ 44565 (-) False XLOC_000903
TCONS_00001419 mRNA downstream 16445 41333 ~ 44534 (-) False XLOC_000903
TCONS_00001417 mRNA downstream 16495 39313 ~ 44484 (-) False XLOC_000903
TCONS_00001435 mRNA upstream 876 65705 ~ 71523 (-) False XLOC_000906
TCONS_00001434 mRNA upstream 876 65705 ~ 71523 (-) False XLOC_000906
TCONS_00001436 mRNA upstream 1454 66283 ~ 69444 (-) False XLOC_000906
TCONS_00001437 mRNA upstream 3058 67887 ~ 71470 (-) False XLOC_000906
TCONS_00001440 mRNA upstream 87178 152007 ~ 157563 (-) False XLOC_000909
TCONS_00001429 other downstream 11144 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001421 other downstream 16433 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001442 other upstream 88409 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001460 other upstream 402914 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001476 other upstream 556196 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001485 other upstream 986112 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 1248776 1313605 ~ 1315753 (-) True XLOC_000932

Expression Profile

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