RNA id: TCONS_00001438


Basic Information

Item Value
RNA id TCONS_00001438
length 751
lncRNA type retained_intron
GC content 0.56
exon number 4
gene id XLOC_000906
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 65705 ~ 71523 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGGACACACTGCGCTTACTGGGCTTCATCCTGCTGAGCGcaggaCTGCATGTGGCATCAGCAGCGATCGTGGTTGATATCCCGCAGAAGCAGTATAAGGTAGCGCGGGGTGATAATGCGACGCTGCCCTGCGCCTTCACCCCGCCGCCGCCGGCCGGATCCACCACTGAGATCACCTGGAAAGCGACTCCAGATGTGCCGGGATCTCCAATGATCGACATCATCAAATTCAACAGTGCCACTGGAATGAAGGTGTACAAGAACTATAAGGGCCGGGCGGGTCTGACGTTTGATCTGACTAAAGGAAAAGCCGACCTGCAGCTGGTGAGGGTCACCAGTGCCGACAACCGGACCTACGAGTGCCATGTGGACGTGCAGGAGGAAGAGGACGGCACTCTATCAGACACCGCCAACCTCATTGTCCTGGTGGCCCCATCAACACCCAAATGCACTATTGAGGGGAAGACGGAGTACTTTCAGGACATCACCCTGACCTGCAAATCGGAGGAGGGAACGCCGACACCGACCTACAAGTGGCAAAGCTACGATGTGTTGAACAACCCTCGCCCAAACCCACTGAAGGCCACCGACGGTACGCGTGTACAAACCTGCTGAATCCCTGAGTTCCTGCATCagctataagtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcctcagTGAACGGCGTTCTGTCGCTCTACAACATCTCTAAGGACACGTCCGGGTTCTACGTCTGCAC

Function

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080229-4 Predicted to act upstream of or within cell morphogenesis and immune response. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including EVL; digestive system; epidermis; periderm; and sensory system. Orthologous to human GPA33 (glycoprotein A33).

Ensembl:

ensembl_id ENSDART00000167148

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003284 lncRNA downstream 18048 47420 ~ 49842 (-) False XLOC_000904
TCONS_00001430 lncRNA downstream 18048 48877 ~ 49842 (-) True XLOC_000904
TCONS_00001428 lncRNA downstream 18195 47820 ~ 49695 (-) False XLOC_000904
TCONS_00001427 lncRNA downstream 19813 47420 ~ 48077 (-) False XLOC_000904
TCONS_00001423 lncRNA downstream 23344 42839 ~ 44546 (-) False XLOC_000903
TCONS_00001439 lncRNA upstream 36813 108285 ~ 110804 (-) False XLOC_000907
TCONS_00003285 lncRNA upstream 36813 108285 ~ 147846 (-) True XLOC_000907
TCONS_00003286 lncRNA upstream 69817 141289 ~ 142119 (-) True XLOC_000908
TCONS_00003287 lncRNA upstream 81766 153238 ~ 157554 (-) False XLOC_000909
TCONS_00001443 lncRNA upstream 82171 153643 ~ 157554 (-) False XLOC_000909
TCONS_00001432 mRNA downstream 2873 60987 ~ 65017 (-) True XLOC_000905
TCONS_00001431 mRNA downstream 3061 60979 ~ 64829 (-) False XLOC_000905
TCONS_00001425 mRNA downstream 17643 44839 ~ 50247 (-) False XLOC_000904
TCONS_00001426 mRNA downstream 18957 46037 ~ 48933 (-) False XLOC_000904
TCONS_00001424 mRNA downstream 24108 43385 ~ 43782 (-) True XLOC_000903
TCONS_00001440 mRNA upstream 80535 152007 ~ 157563 (-) False XLOC_000909
TCONS_00001441 mRNA upstream 80844 152316 ~ 156375 (-) False XLOC_000909
TCONS_00001447 mRNA upstream 88830 160302 ~ 201004 (-) False XLOC_000910
TCONS_00001448 mRNA upstream 113443 184915 ~ 191971 (-) False XLOC_000911
TCONS_00001449 mRNA upstream 113444 184916 ~ 192033 (-) False XLOC_000911
TCONS_00001429 other downstream 18055 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001421 other downstream 23344 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001442 other upstream 81766 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001460 other upstream 396271 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001476 other upstream 549553 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001485 other upstream 979469 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 1242133 1313605 ~ 1315753 (-) True XLOC_000932

Expression Profile

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