RNA id: TCONS_00017868


Basic Information

Item Value
RNA id TCONS_00017868
length 6094
RNA type mRNA
GC content 0.43
exon number 7
gene id XLOC_009067
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14203675 ~ 14212777 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAGCCACAGTCGTAGCCACAAGCACATTCTCTTAGTAGTTAGACAGCTCTGACGGAAAGTCCGCTGATGTGGTATGTCACTGCAGACGAAGGTGAGTATGTGTGCTGAATTCTCTATTTAGGATAAAGTAGAAATTCTGAGATTAGGTTTATATATGTATTGACAATTGTGATCGATCTATTGATAGTTCTATATATAAAGCAATGTAGTACAACTTCATGAATTACATGAACAAAACGTTTTTAAATATGTGCAACCTTTTCCtttcattttctgtttttgtgtAGGAGTGAAAATTGATCACTTTCATTTTTACTGCATACACAAGCTCTGGTTGAACAATTCAAATTCTCAGACTTTCTAAAGCTGACTGTAACCAAAGAGAGTTTGTTTTGAGTCATCTTACTAAACCGAAGTAATCCACCATGGCACGTGAACAGGACTACTACACTCTCATGTCTGGTATGCAACAGCTTGATTTGCAGGGGAACGCAGTCCCCAGTGATCTTGTACTAATAGGAGAGCATGCCTTTCCACTTGCCATGAATCCAAGAGGTCAGGTGCTCATGGCTGCATCTCATTACGGTCGGGGTCGCATTGTAGTGCTGGGACATGAAGAATACTTAACACGATTTCCTGGGCTGATAGAGAATGCCATAATGTGGCTCATGCCATGTACCGGAGATGCTGGAGTTGTAGGGATTCAGAAAAGTTTACGAACAGTAGCTGAAAACTTGAACTACAGCCCTTTCAAGACAGAACTAGGAGACTTTCAAGATAGGTTCGCTATATATATCACTGATGCGTACAGTGTTGAGAGCTCTGCAAAGGATCTGATTGCTTTCCTCAAAGCTGGGGGTGGTTTGATCATTGCTGGACAAGCATGGAGTTGGTCTTATGAACACCCACAGGAAAACACTATCAGGAACTTTCCAGGAAACAAGGTGTGCAGTGTTGCAGGCATTTACTTTTCAGAGCTTGAAGGAGAAGTCGGCACCTTTCCTGTTCCTCGAAATATCCCTTCTAGTTGGCTTGCCGTGGCAATAGGCAAAGACTTTAAAGAGGACCTAGAGTTCCTGCTGGAAGGTGTGTCTGAGTTTGACACTCAAGGTGGGGCTATAGCATCAGAGGTGATGGTGCACGGACCATTAGCGTTTCCCATTGCGGTCACTCCAAATGGAAAAACATTCATTGCTGGTGCCTATTATGGACAAGGGCGAGTAATTGTGGTATCCCATGAAGGGTACATGGGCCGAGACTCTCTGTCCTCTTTTATGATCAATGCTATTAAGTGGCTTGATGAGGGTCGCAAGGGTGTTGTAGGGATCGTACCCAACCTCACTGCAGCCCATACAGTACTGAGCAAATCTGGTTTAGACTGTCAATTGACCGGTTTCAGAGAAGATCTAAGCGTCTACGTCTGCACTTCCTACAGTGATGCACAGTGTGCAGAGATTCAGGAATTTGTTGCAGAAGGTGGAGGTCTTCTTATTGGGGGTCATGCCTGGTACTGGGCTCAGACCCACTGGGGCTCCAATGTGATGACTGAATACCCCGGAAATCACATTCTTAACAAGATGGGATTGTGCCTCTTGGGAAACACCTTGGGTGGAGGGTTATATAAAGCTCCAGAAATAGAGCATAGTTGTAAACATGGGTACCACTTTCGAAGCATGCTGCAGAGATTTGCTCAGCATGTAAGCCAAGGGCAAGAGCTGACTGATCGAGAACAGGGCTGTTTGAAGCAGCTGGGCACTGACTGTGCCAGTTACCTTCAAATGCGTTGTCATGACAGTGCTGCTTACACCTCAGTGGTAGCTCTTCTTAGTGACATAGTAAAGGAAGTAGGTGTTCCACAGGTGTGTAGTAACTGCCCTGTTGAAAGTCCCAAAGACCACCTGATGCTCCACATTGGTACTGAGGTCTACAAAGTGACGCCTGATCCCGACGCCCTTCTTCCCTACATCATCAAGGACAGACCCAACTTGCCAACTTTGTCAAATGCAAGAGTTCGGATTACTGCCAACACTGGAGGTTGTGAAGAATGGATAAGCACAGGCTTATATCTTTCTCCTGGTATGAAGACATACATAGCAGTACCTCCAGAGATTGTTGGAAAAAATTGGCAGGTGCAGCTTGGTTGCCAGACAGACAACATTGGTGGATCAAACACCCTGAAGCGGGCACCTGTAGTCCATGCACGATTCCCCTTGGATTCAGAAATGGTGCAGGTCTGGAATTTGTGGGGAGGGCTAATCTACCTAATAGCACCTTCCCAAACCAAGGTGGATGGGGTGGAAATTGTTGTGCAGACTGCAGTACAGGCTCCATACTTCAAGTCTGGAGAGACAAGCGTAGCAGACTGGGTGAGCCATATTCGTCAGGCACCTGCCCCCTGGGCGGAGCTTGAGTTTGAAAACCTCATCATGACATTTGATTCAGCTTTCATAAGGAATCTGGACCGCCCTGATGAAGTGGCTAAACTTTGGGATACCATAATGAGAACTATAACTGACTTGGCAGCAAGGCCACCCAAATTGCCTCGCAAGGAACGTTTTGTTGCTGATGTTCAGATCTCTTATGGTTTCATGCATGCTGGATATCCCATAATGATGCACTCCGGCTCTGCTCCAGGACTAGTAAATGTTGAGGAAGCCTATAAATGTGGCCTCTGGGGAGCCATTCATGAGCTGGGCCATAACCAGCAGCGTGGAGTTTGGGAGTTCCCTCCCCACACCACTGAGTGCACATGCAACCTGTGGTCATTGTATGTACATGAGCAAGTGTTCGGCATAAAAAGCGCTAATGCTCATCCAGCCATCACTCCAGCAGACCGCCAGGCTCGTACCAAGATGTATTTTGATGGTGGTAAAGATTTAAACAGCTGGTGCATGTGGATGGCACTTGAGACTTACATGCAGCTTCAAGAAAAATTTGGCTGGGATGCTTTCAAGAAAGTCTTTTCTCTCTACCATGACATGACCGGTGTGCCAAATGACAACGCAGGGAAGATGAATCTATACGCCCAGACCTTCTCCAAAGTGGTCAACCTGAATTTATCCCCATTCTTCAAAGCATGGGGTTGGCCCATCCAACCTAACACAGAACAGAATCTCTCCCATCTTCCTGCATGGAGTGACCATCCTGTTAGCCAGTATGCATAAAAACACATCGAATAGCTTTTTCAAAGTATATGCATATATGAAGTGGACATTGTAGTAATTACATTTTGCTATTCGTTTAATAGGTGGAAGAGCAATTAACTTATATCAGTGTGATGCACgtttgctcagcacagtggagatttctttagttgtatcgttttagtcgtttgggatgcggtgacacacagtcaaatatttcacctaaCAGATCAgacacttttgacgctcataaacaaccatgaattcctcatgctgcaggaattatgaggtttgctaaaggtgcagctgtcgtgcagtgagaggtttgcgtctatATTAATCTACGACAGTTAGCGTTTATTGAacaataagaatgattaataaattcatatgaaactGTCATAAAAAGTCACGTCTTGTcctcagtttcgggctcaggcacggtttgCACTCAATACAAGCGTACCGCGCTGAGCCCAAgtaaaccgcgctctggcacacctcttccaaccgggccaggtcCGGCTAAGTGATCCATGCCTGAGCCTGATtgagagcactcacacttcttaaacgaaagggcctgggcacggttttggtggcatagtgtgagtacgccctaagtggGCTAAAGGTAAATATATACCAGAATATATGCTCAAAACACAAAATCAAACTATTATACTGCAGTTACAAAAATGATTGCCTTTTCAACTATATTACTTGGCATTTTGGTGTATTTTGAATCTCTTTCTTAATCTCCAAGAAAATAAATCTTATAAATTAttctaaaataagtctctgtGTGTAATGTTGATGGGATTTGAAAACACACACGTGCTATTACTAATGCTTAACagatttctttcatttatttgaaGCTGTTAGTTAGCAGCTTTGCATTGGCCGCTAAACAGCTCATTCACCGGTGCATCAGAGAACTGCTGTATGAAGTCGACCATCTCATCTAGGCTTCTTTCCACAACAACATTCAGCTCTGTGTTGAGGGCAGTCGCAGCTCCGCTTAGGATGGGCCGGCCATTTTGATCAATGCAGCAGAAAGCATCCCACAAGTACTCTGGGATGTTTACCCTTTTCACATTGTTCTTGATGATCCAGTTGTTAGAAGAAGGGATGGCACCAACCAGAACATAGGCCTGATGACAGTTTGCTTTAAACAAGCTGGTCAGTTTAGACTCGTGTTTATTCCAAGCATTCTGGTTCAGCGTTGGGTTTTGAGGGACCACATTCGTCAAGGTAAAGGTGGCATTACGACTTGGAACTAACACAAAGGGGATGTtacaaaagagagaaaaagcAAACATTAGAAACAAATTTTAAGATATTGTGCCAATGTAAGTCCAAATAATAACAGATCTATCTGAAACAATGTTGTGGAGGCTAATTGACCATTTACACAGTAACTGGACTTTGATTAGTTAATCTGAGCACTTGAGGTGAACTGTCATGCCATTTAATACTCACTGTGTTTAAATTGTGCCTTGTTAAAAATTTCAATCTACACTGCCTTATTGATACCAACACTTAATTTCTTAAGTAATATGGATGCTTGGtttatttaaatgcttatattctgattattctttttaaatattacactatcaatgttgttaaaaaaaatctgatcatATTGAAACCAAAGTGACACCACCTttcagtgagttttttttttttttttaagatcaatTCTTTATTAGTTTTACCTGCATGATGTCCATTAGGGTTTAGATGGCCTCGATCAAATCCTGAGTTTGTGTAGTCTTCATTCAGAGCCTGTTTCTCTCCCAGATAGATGTCTGGGTTCTGCTGAGACAGCTTATACCCATCTTCCATTTCAGTGGACCATGCGGGACTCACCAGCTAGCAAAACATAACTGCTTATTCAAGAACTGTCAGAATTACAATAATATATAAgtctaaaatgtattaattagcaCTACTTACTTCAACAAATTACCATGCCACATGAAAacatacaatagtaatttatagtaaatactatattgTTTTGGATCCATAGTATAGTGCAGTAGTGCTCAAAGTTTTTTCAGTAAGAACCATctccgaaaaaaaaaaagttccaccataatgaccagtattaaggtacagtagcatagtaggcctaattaagcagctacagcactgcacagttcaaaaacgtggcaaATCAATTCTTATTAAGAATGTTTATGgtaacgcagtaggtagtgctgtcgtcttacagcaagaaggtcgctggttcgagccttggctgggtcagttggcatttctgtgtggagtttgcatgttctccctgcgtttgcgtgggttacctccgggtgctccggtttcccccacaatccaaagacatgcggtacaggtgaattgggtaggataaattgtctgtagagtatgagtgtgtggatgtttcccagagatgggttgtggctggaaggtcatccgctgcgtaaaacgtgccagataagttggcggttcattccactgtggcaaccccagattaataaagagaccaagccgaaaagaaaatgaatgaatgcagaatatttatttttgtccgccactttaaacattataaatagtttgaacattaacactacACTGTGGGTacagttaaaaaaatgaataaaaagtcaaTGTTtaagtttaaagagcccatattatgggtttttgaaaattcccctccatgtagtgtgtaacacagctctaagtgaagtaaagtatccagctaagacttaaatctgtaagaatacagtgtttaaaactgttgattcatctataaaagagtcgactcatagtgcttcaaacgagtcgccttgataacgattcattaggtgtttcgccatgacgtagagaaggctttgtgtgtcagaaaagcaagtcATTACACCATACAGTACCTGTCAACATTGCGATATAAAAATATGGGAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000179599

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019131 lncRNA downstream 139325 14062613 ~ 14064350 (-) True XLOC_009063
TCONS_00017856 lncRNA downstream 139373 14062613 ~ 14064302 (-) False XLOC_009063
TCONS_00019129 lncRNA downstream 995263 13206185 ~ 13208412 (-) False XLOC_009060
TCONS_00019130 lncRNA downstream 995263 13206623 ~ 13208412 (-) True XLOC_009060
TCONS_00017849 lncRNA downstream 1657992 12526417 ~ 12545683 (-) True XLOC_009059
TCONS_00019132 lncRNA upstream 18866 14229248 ~ 14232070 (-) True XLOC_009068
TCONS_00017870 lncRNA upstream 35708 14246090 ~ 14248047 (-) True XLOC_009069
TCONS_00017885 lncRNA upstream 469673 14680055 ~ 14696775 (-) True XLOC_009077
TCONS_00017888 lncRNA upstream 672909 14883291 ~ 14884061 (-) True XLOC_009080
TCONS_00019133 lncRNA upstream 817830 15028212 ~ 15030391 (-) True XLOC_009081
TCONS_00017862 mRNA downstream 9467 14163193 ~ 14194208 (-) False XLOC_009066
TCONS_00017864 mRNA downstream 9467 14177861 ~ 14194208 (-) False XLOC_009066
TCONS_00017863 mRNA downstream 9467 14177861 ~ 14194208 (-) False XLOC_009066
TCONS_00017865 mRNA downstream 9749 14178721 ~ 14193926 (-) False XLOC_009066
TCONS_00017867 mRNA downstream 10016 14190096 ~ 14193659 (-) True XLOC_009066
TCONS_00017871 mRNA upstream 46850 14257232 ~ 14375452 (-) False XLOC_009070
TCONS_00017872 mRNA upstream 92673 14303055 ~ 14375571 (-) False XLOC_009070
TCONS_00017873 mRNA upstream 92938 14303320 ~ 14375489 (-) True XLOC_009070
TCONS_00017875 mRNA upstream 225777 14436159 ~ 14552101 (-) False XLOC_009072
TCONS_00017876 mRNA upstream 225784 14436166 ~ 14467394 (-) False XLOC_009072
TCONS_00017866 other downstream 9779 14185388 ~ 14193896 (-) False XLOC_009066
TCONS_00017858 other downstream 120562 14076539 ~ 14083113 (-) False XLOC_009064
TCONS_00017854 other downstream 379071 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017830 other downstream 2227415 11976143 ~ 11976260 (-) True XLOC_009050
TCONS_00017819 other downstream 4017506 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017874 other upstream 104972 14315354 ~ 14315470 (-) True XLOC_009071
TCONS_00017882 other upstream 425287 14635669 ~ 14635785 (-) True XLOC_009076
TCONS_00017891 other upstream 1011101 15221483 ~ 15224702 (-) False XLOC_009082
TCONS_00017896 other upstream 1173516 15383898 ~ 15383983 (-) True XLOC_009086
TCONS_00017917 other upstream 1748994 15959376 ~ 15960468 (-) True XLOC_009094

Expression Profile

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