RNA id: TCONS_00018145


Basic Information

Item Value
RNA id TCONS_00018145
length 881
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id XLOC_009230
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 24592325 ~ 24618905 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCTACCTTGTGCCGTTGAAAGATGGAGTCTTTCCTTTCTCTGTAAGAATAATCTGTGTATGAATGAGAATGAATGATGAGCAGCAGGATGAGGATCAGCAGAGCTCTCCCACACAGCGCTCGGAGACATTCTGTCCTGGACAATTATTTCTGAGTCCACTCCCTACATCCGCGGGGCGACCGTGCTGGACGGGTTTTACCTCTGACCCCGGGGGGACGCAGTAGGAGGCTCAATAAAGCTAGTCATTGCTGCATACAAATCACACAATGGAGAATGGGAGACTTAAATATGGAGCAGAGAGAGAGGAAATTGGAAACATCGCTTTCAGCATTATGGGCATAGTGAAGATGATCGCTGAATGTGCATATATATTGCTGCTTAGGCTAAGAGGAATATCATGGCTGCCATAGAGAGGAGGAACCATCACAGAGCAGACATATGTGCCCTCACTGTGCTTTCTGGTTGGTTCAAGTTTAAAGGAGGCGTTTCCGCCAGCGATGGTCTTGACAGTCACTCCTTTGCCTTCACTTTTACCAGTGCGGCTGGAGTAGCTAAAAAGCTTGGTCCGTTCTCCATGTCTTTGAAGTCTCCACTCCACTGTTGCATTGGGCAGTTTATGATCTACTGCAAACTGACAGTGCAGCTCTGGCTCTTTCAAGAATCCCACCTCAACAGAGGGAGTCCGGGTCAAAACAACCATTGCAGCTGGAAAACACACAAGGAAGACACTTTAAAACATGCAGGGTTTTTCCTGCAAAGAGAATTACGAGGTGGCCACCTCCATTAAATTTGTATCACCACTCAAGTCTACTGACAGACCCTAGGTCATGCTCAAGCATTGGTCATGCATTTAATGTtagtcttttaaaatatatttta

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019157 lncRNA downstream 29264 24561821 ~ 24563061 (-) True XLOC_009228
TCONS_00018135 lncRNA downstream 799045 23792650 ~ 23793280 (-) True XLOC_009222
TCONS_00019156 lncRNA downstream 945372 23644312 ~ 23646953 (-) False XLOC_009216
TCONS_00018127 lncRNA downstream 945372 23644603 ~ 23646953 (-) True XLOC_009216
TCONS_00018126 lncRNA downstream 947047 23644312 ~ 23645278 (-) False XLOC_009216
TCONS_00019158 lncRNA upstream 282677 24901551 ~ 24922411 (-) False XLOC_009234
TCONS_00019159 lncRNA upstream 282677 24901551 ~ 24927093 (-) False XLOC_009234
TCONS_00019160 lncRNA upstream 285528 24904402 ~ 24908825 (-) False XLOC_009234
TCONS_00019161 lncRNA upstream 285528 24904402 ~ 24922411 (-) False XLOC_009234
TCONS_00019162 lncRNA upstream 285528 24904402 ~ 24922448 (-) False XLOC_009234
TCONS_00018143 mRNA downstream 3676 24583682 ~ 24588649 (-) True XLOC_009229
TCONS_00018141 mRNA downstream 413432 24150090 ~ 24178893 (-) True XLOC_009226
TCONS_00018139 mRNA downstream 649464 23922264 ~ 23942861 (-) False XLOC_009225
TCONS_00018140 mRNA downstream 656049 23931575 ~ 23936276 (-) True XLOC_009225
TCONS_00018137 mRNA downstream 683546 23816945 ~ 23908779 (-) False XLOC_009224
TCONS_00018146 mRNA upstream 54409 24673283 ~ 24676211 (-) False XLOC_009231
TCONS_00018147 mRNA upstream 54855 24673729 ~ 24676315 (-) True XLOC_009231
TCONS_00018148 mRNA upstream 226271 24845145 ~ 24869826 (-) True XLOC_009232
TCONS_00018149 mRNA upstream 254514 24873388 ~ 24883956 (-) False XLOC_009233
TCONS_00018150 mRNA upstream 259606 24878480 ~ 24884784 (-) True XLOC_009233
TCONS_00018142 other downstream 433258 24158953 ~ 24159067 (-) True XLOC_009227
TCONS_00018102 other downstream 1637193 22955017 ~ 22955132 (-) True XLOC_009204
TCONS_00018101 other downstream 1871444 22720765 ~ 22720881 (-) True XLOC_009203
TCONS_00018099 other downstream 2331328 22260881 ~ 22260997 (-) True XLOC_009200
TCONS_00018076 other downstream 3052049 21521803 ~ 21540276 (-) True XLOC_009187
TCONS_00018151 other upstream 289520 24908394 ~ 24908479 (-) True XLOC_009234
TCONS_00018157 other upstream 465947 25084821 ~ 25093717 (-) False XLOC_009240
TCONS_00018169 other upstream 619615 25238489 ~ 25268641 (-) False XLOC_009244
TCONS_00018173 other upstream 659971 25278845 ~ 25284045 (-) True XLOC_009245
TCONS_00018187 other upstream 959314 25578188 ~ 25579500 (-) False XLOC_009252

Expression Profile

//