RNA id: TCONS_00018148


Basic Information

Item Value
RNA id TCONS_00018148
length 2704
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_009232
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 24845145 ~ 24869826 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGCATCCCCAGGGGAAGAGCATTACGTGGGAAGTCCTGCAGGAGCTCCATCACTGATGCAGAGGAGAGGAGGTGAGAGAGGAACAACGCAACTCACTGCTGCGCAACTATACTTTCACCTGCTGCAACAACACGTAACAGCCCAAAGCTGCCGCTCTTTCATTTTTGCACGAGAACATTTGTATctttttttcaacgcattttgCTACGTTTAAGTGATGCTGCTGTGGAAATGCCTCTCATTTCTGTGGTTTAGTTGATGTGTGTGGGCAGAGGAGACGATCTTCCGATCTGGGACTGAACTGAGCGGAACTGAATCCATTAAGCCGATCACACAGAGGATGGACATACATGGGAGAATAACACTACAGCGCATCTTTGACTTGTTTAATTAGTTTAGactagaaaaacaacaacaacaactacatcGATATCTTTAATTCGAGCTATTAACCGTATGAATAAATTAAAACGGGTAATTTTGAGTTGAAGAAATTGTAAATAATGGGAAACTAACGCCGTCCGACTACTTTGATAACATTTTGTAAGCCCCAACAGGAGTTTTTCTTTCAAAGACAATAACAACGTTGGATTTCCACAATGGCAGTAAACACAGATACGGAGTTTGGTAAATCAAATCTGGGGGAGAGTGGCGGCACGCAACCAGCCGAGACGGAGAAACTGCTCGTGACCACCGAGCCCACCGGGGTGAAGACCTCTAGCTCCTTCACCGTCAGTGTCGGGGGCGACAAGACTCTCGACGGGGACCAGAATGGCCACAGTCTGCCGCTGAGGTCCGGTTCGGCGGGGCATCTCGGCGCGGCTCCTCTCTCTCCGTCTAGAGTGAGCCTCAGCCGCACTTCATCCACCGGTAATGCCGTCCAAGAGCAGCAAAAACCCAAAGACTACCTCATACTGGTCATTTTTTCCTGCTTTTGTCCCGTGTGGCCAATAAGCATCGTTGCACTGGTCTATTCAATTATGTCCAGAAACAGTCTACAGCAGGGGGATATGGATGGGGCAAGACGTTTGGGACGTTTGGCTCGTCTGCTTAGCTGTGTGGCCATCATCGTGGGCCTCCTGAGCATCATAATATATGTGGTGGTTGCAGTTACCGGAAAGGGGACAAAGTAaagatgactactactactactactactactgcaaaAAAACCCACAGATGATGTAATTAAAACAAGATCTCCCTCTTATCAATAACGCCACAGAAGATGAAAAAGAAACGAGGACTGTCGCAACTAAATAAGATCTGATTAAGTAGCGAAAATGCATGCAGTAGGTTAGCATGCTcagtgaaaaaattaaataaattcaaaatcccATATGTTAAAAAGAACAGTGATGGCTTGCATTATGTAAATGAGAAATACTGCTGTATCGGCAAAAAAAAAGTGGCCTGTGGATGATGACACAAAGGACAAGgacttcttcttttcttttcttttttcaaaaatgGAAAACGTCTACACACAGCTGCATTTTAACCTTATATTACTCCTGGTCGATCTTGCATTTGAAAATTATGCACAGAAATATTTGCAACTAATAAACTACTGATGTATGTTTTATAGAAAAGATTTCTATGTGGAGTCTGAGCTGAGGGATTGAACTAGGGTCGACTTATCCATGTCAGGTGTAGAAACGAACACTGGGGTTGGAGGTTTcatttttctccatttattttGTAGGTTTGGATTTCAAACAAATGACCACGTGCATGTCTGACCTTGTATGTGAATAAGTGTCAGCATTTTCAATGactatatctttttttaatctgTGAGAGTAGTAGTGGGAGTCTACAGATGGGACTGTACATCGTTGTCCGTAGTGTGTCAAATGCTATATTCTGTCAAAGACACAGCATTCATGGAGAGCTCAGCCTCTCATTACACGTCCTGTACTAGTCTAGTTTTCTTTAGAGAGGTAAGACTGTAACGATACGCATGCCAGGCCTCTCTTTCCTAACAAAAACTGCTGGAGCATGGACATTCATCTAGAGGCATGCGGCGGCCAGCACCATTCTGTGCCAAGACCTTTATATCAGTATGCTAAACGCACCACAGGACTATTCATCCTTCCCCGGGTTCTTTCCAGGACAGAATGTCAGACTCCCGGTCATAAATCTCCCTACTTAACCCTTATAAATATGAGATATATATCAACATATTTATAGAAATATTTAGGCATGCTGTGGGTGGACAAAACACTTTCTATCTTTAAGAATGAGCTTGTGTGTAAGACCGTGTCCTAACCAGACGCAACGTGATAAGACTCTTGTCTTGACAGAGTTACATGACGTAACAAAAGATACAAAACAATGtcacagccaatcagaagagAGTGTAGGCATGATCGTCTGCAAGTGACGAGTTTATAACGCATAATACAAAATAACCAGAGCATTGTTAAAATACATGCTGAATGACTGTTACCATCTTTGTCATgtgatttacttgtttttttttctctcagttttTATGATTCTTTTTATAACATCAAGAATTAGAAATGAAGTAGTgaattaataatctgttttttttttacattaaagctTTCAGTCAGTACCTGAGATTATCACATTGCATTTTAATGCTGGGttcaaactagggctgcatgatatttcATAGGACAGTGTATGTGCGTAAAATATaatcagtggcggttctagtttaaatggcaccct

Function

GO:

id name namespace
GO:0048675 axon extension biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-306 Acts upstream of or within axon extension. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in Rohon-Beard neurons; hindbrain; and trigeminal sensory neurons. Orthologous to human TRARG1 (trafficking regulator of GLUT4 (SLC2A4) 1).

Ensembl:

ensembl_id ENSDART00000127047

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018144 lncRNA downstream 226240 24592325 ~ 24618905 (-) True XLOC_009230
TCONS_00018145 lncRNA downstream 226271 24592325 ~ 24618874 (-) False XLOC_009230
TCONS_00019157 lncRNA downstream 282084 24561821 ~ 24563061 (-) True XLOC_009228
TCONS_00018135 lncRNA downstream 1051865 23792650 ~ 23793280 (-) True XLOC_009222
TCONS_00018127 lncRNA downstream 1198192 23644603 ~ 23646953 (-) True XLOC_009216
TCONS_00019158 lncRNA upstream 31725 24901551 ~ 24922411 (-) False XLOC_009234
TCONS_00019159 lncRNA upstream 31725 24901551 ~ 24927093 (-) False XLOC_009234
TCONS_00019160 lncRNA upstream 34576 24904402 ~ 24908825 (-) False XLOC_009234
TCONS_00019161 lncRNA upstream 34576 24904402 ~ 24922411 (-) False XLOC_009234
TCONS_00019162 lncRNA upstream 34576 24904402 ~ 24922448 (-) False XLOC_009234
TCONS_00018147 mRNA downstream 168830 24673729 ~ 24676315 (-) True XLOC_009231
TCONS_00018146 mRNA downstream 168934 24673283 ~ 24676211 (-) False XLOC_009231
TCONS_00018143 mRNA downstream 256496 24583682 ~ 24588649 (-) True XLOC_009229
TCONS_00018141 mRNA downstream 666252 24150090 ~ 24178893 (-) True XLOC_009226
TCONS_00018139 mRNA downstream 902284 23922264 ~ 23942861 (-) False XLOC_009225
TCONS_00018149 mRNA upstream 3562 24873388 ~ 24883956 (-) False XLOC_009233
TCONS_00018150 mRNA upstream 8654 24878480 ~ 24884784 (-) True XLOC_009233
TCONS_00018152 mRNA upstream 76495 24946321 ~ 24960730 (-) False XLOC_009235
TCONS_00018153 mRNA upstream 80856 24950682 ~ 24960781 (-) True XLOC_009235
TCONS_00018154 mRNA upstream 137383 25007209 ~ 25010400 (-) True XLOC_009237
TCONS_00018142 other downstream 686078 24158953 ~ 24159067 (-) True XLOC_009227
TCONS_00018102 other downstream 1890013 22955017 ~ 22955132 (-) True XLOC_009204
TCONS_00018101 other downstream 2124264 22720765 ~ 22720881 (-) True XLOC_009203
TCONS_00018099 other downstream 2584148 22260881 ~ 22260997 (-) True XLOC_009200
TCONS_00018076 other downstream 3304869 21521803 ~ 21540276 (-) True XLOC_009187
TCONS_00018151 other upstream 38568 24908394 ~ 24908479 (-) True XLOC_009234
TCONS_00018157 other upstream 214995 25084821 ~ 25093717 (-) False XLOC_009240
TCONS_00018169 other upstream 368663 25238489 ~ 25268641 (-) False XLOC_009244
TCONS_00018173 other upstream 409019 25278845 ~ 25284045 (-) True XLOC_009245
TCONS_00018187 other upstream 708362 25578188 ~ 25579500 (-) False XLOC_009252

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000072_02460431_02474361.mRNA True 1508 mRNA 0.47 5 CI01000072 2459743 ~ 2474404 (+)