RNA id: TCONS_00018160


Basic Information

Item Value
RNA id TCONS_00018160
length 552
RNA type mRNA
GC content 0.54
exon number 4
gene id XLOC_009241
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25093291 ~ 25099679 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atggtgGGAAGACTGAACTTGCGGAATGTGTCTGACGACGATCCGCTGGATATGAACTTTAAAGCTGACCGGCCGCTGGACAGTCCGGACTCCGGTCTGCCCCCTAGTCCGAGTCCAAGCGTCTGGTTACTGCAGGGCGCAGGGGCTGGAACCCTGGTTCCTAATAATAGGCACTTGCATGCATTGTCCTATGGAGAAGGAATTGAACTTGACTCTCTACCACTAAAAGAAATAagATACACGTCGTCTGTGCGTTATGATTCAGATCGGCACTTCATTCAGGACGTGACCCTGCAGCCCAGGGGTTTGGGTCTGGAGATGTGCAGTCAGACAGTGCTGGCTCTTCCTCAGAGCACGTGGAGACATTATAAGACCCAGCTGGAGTTTGGGCCCCGTCAGCGGGTGCAGCGCTATCAGAGCACCACCATAGTCTATCCCAAACACACCCGGACCTTCTACACCACCCAGCTCAATTATGACGGGCACAAGCTGACCAAGCGCTTCTTCTCTGCGGTAGAGCTGCAGGCTTCTGATTGCAGGGCTTGCAACTAA

Function

GO:

id name namespace
GO:0061181 regulation of chondrocyte development biological_process
GO:0061182 negative regulation of chondrocyte development biological_process
GO:0061572 actin filament bundle organization biological_process
GO:0048705 skeletal system morphogenesis biological_process
GO:1900158 negative regulation of bone mineralization involved in bone maturation biological_process
GO:0032432 actin filament bundle cellular_component
GO:0031005 filamin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090409-1 Predicted to enable filamin binding activity. Predicted to be involved in several processes, including actin filament bundle organization; negative regulation of bone mineralization involved in bone maturation; and negative regulation of chondrocyte development. Predicted to act upstream of or within regulation of chondrocyte development. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be active in actin filament bundle. Orthologous to human RFLNB (refilin B).

Ensembl:

ensembl_id ENSDART00000192617

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018824 lncRNA downstream 119179 24968092 ~ 24974112 (-) True XLOC_009236
TCONS_00019159 lncRNA downstream 166198 24901551 ~ 24927093 (-) False XLOC_009234
TCONS_00018168 lncRNA upstream 115895 25215128 ~ 25229469 (-) False XLOC_009244
TCONS_00019163 lncRNA upstream 599579 25698812 ~ 25760624 (-) False XLOC_009254
TCONS_00019164 lncRNA upstream 599579 25698812 ~ 25876114 (-) False XLOC_009254
TCONS_00019165 lncRNA upstream 619511 25718744 ~ 25760609 (-) False XLOC_009254
TCONS_00018193 lncRNA upstream 619511 25718744 ~ 25760634 (-) False XLOC_009254
TCONS_00018156 mRNA downstream 10091 25080041 ~ 25083200 (-) True XLOC_009239
TCONS_00018155 mRNA downstream 54208 25035947 ~ 25039083 (-) True XLOC_009238
TCONS_00018154 mRNA downstream 82891 25007209 ~ 25010400 (-) True XLOC_009237
TCONS_00018153 mRNA downstream 132510 24950682 ~ 24960781 (-) True XLOC_009235
TCONS_00018152 mRNA downstream 132561 24946321 ~ 24960730 (-) False XLOC_009235
TCONS_00018162 mRNA upstream 1493 25100726 ~ 25153352 (-) False XLOC_009242
TCONS_00018163 mRNA upstream 1496 25100729 ~ 25153403 (-) False XLOC_009242
TCONS_00018164 mRNA upstream 2715 25101948 ~ 25126842 (-) True XLOC_009242
TCONS_00018165 mRNA upstream 73438 25172671 ~ 25198107 (-) False XLOC_009243
TCONS_00018166 mRNA upstream 98194 25197427 ~ 25209308 (-) True XLOC_009243
TCONS_00018151 other downstream 184812 24908394 ~ 24908479 (-) True XLOC_009234
TCONS_00018142 other downstream 934224 24158953 ~ 24159067 (-) True XLOC_009227
TCONS_00018102 other downstream 2138159 22955017 ~ 22955132 (-) True XLOC_009204
TCONS_00018101 other downstream 2372410 22720765 ~ 22720881 (-) True XLOC_009203
TCONS_00018099 other downstream 2832294 22260881 ~ 22260997 (-) True XLOC_009200
TCONS_00018169 other upstream 139256 25238489 ~ 25268641 (-) False XLOC_009244
TCONS_00018173 other upstream 179612 25278845 ~ 25284045 (-) True XLOC_009245
TCONS_00018187 other upstream 478955 25578188 ~ 25579500 (-) False XLOC_009252
TCONS_00018188 other upstream 479242 25578475 ~ 25584862 (-) True XLOC_009252
TCONS_00018197 other upstream 895747 25994980 ~ 25995095 (-) True XLOC_009256

Expression Profile

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