RNA id: CI01000147_00546348_00552951.mRNA


Basic Information

Item Value
RNA id CI01000147_00546348_00552951.mRNA
length 3350
RNA type mRNA
GC content 0.38
exon number 7
gene id CI01000147_00546348_00552951
representative True

Chromosome Information

Item Value
chromosome id CI01000147
NCBI id null
chromosome length 707134
location 544167 ~ 552951 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAACCGAGAGCTGAAAGGAGACGATCTGGTGATCTACAGGATGTATACCCCATACGCTGGCCTCTACACGTGTGTCGTTTCATATCAGATGAACGGACGCACACTCCAGTTCACACGCGCAATCAACATCACAGCTGTTGTTGCTAATGTCGGCAGTAAAGTTCCCGACATTCTGAATCCCGCAAGTGATCAGATCTACACAGTGACTCTGGGAGATAAAGCGACGCTGTCCTGTCGGGTGCATCTGCCTCACCTGTTCAAAGAAAAGCAGGAGATCTGGTGGACCATCGATAACAAAACTGTGGAGCAACTCGCCGACCCGCGATTCAGCTCACCTGAGGCCACGCTTCTGTCGGAATATTTCGGCGATGAGACGAAAGAACGACTCCTGCATGTGATGGATTTTTCAGCTGATGACCTGCAGAAGGAGTTCAACTGCTCCGCCAGAAACAGCCGCGGGTTCAACACCAGCAGAGCCATTCTCAAGAGCCAACGTGTGACTCTGGCGCTCATGTTGATGATGTTCGTCGTCTATCACGTGTTCTGGCTCGAGCTTCTGCTGCTCTATCGCTCCTGGTTCGGCTCGGATGAGAGATACACAGATGATAAGCAGTATGACGTGTACATCTCGTACGCACGCAACAGCGAGGAGGAGGAGTTTGTGCTGTCCACGCTGCGCAGGGTCCTGGAGACAGAGTTTGGTTACTCTGTCTGCATCTTCGACCGGGACAGTCTTCCTGGAGGAACTATAACAGATGATACGCTGAGGTTTGTGGGTCAGAGCCGGAGGCTGGCGGTTGTTGTGAGCCCGTGCAGCACTGTCCGTGGGACACAGGCGCTGCTCGAGCTGCAGGCCGGATTGACCAGCATGCTGCACGGCGGCAGCCTCAGGGTGGTTCTGATCCAGTTCAAACCGGTCCGGTGGAAGAGCTGGGTCAAAGAGCTCCGTCAGGCCCGTCTGGCGCTGACACTCATACGGTGGCAGGGCGAGAAATCGGCCCCTCTGTCCTCACGCTTCTGGAAACAACTGCAGCTCGAGCTGCCCATGAGGAGGACCACAGACAAACACATGCCGCTGCCAGACATCACACAACACACACACCACGCCGAAAACACACATCCTGGAAAGGAGAAACTAATCGATTGCTATTCTACAAGTGCGTTATAGACGTCCGTCGTGTCCGGAATCGCTCTCTATTCCCTATATAGTCAAATTTGTAAAGCGCTTTTTTTTTCCATTTTAAAGCAGCTTTACAGAAAGTCGAATAGTGGATGCCATATATTATTTATACATCACTTTATTGTGTCAAAACAAGAAAATAATGATTCGGTGACGCAAACAGAGTTCAATTCTGCTGTAAAGAAGCTCTAAAAGTAAGACAATAGTGTCATTGTTCAGTGTTGATTCAGTTCCGTTCAATAACTGTGTTCATAAAGTTTGTCAATTATGAAATGAGTTATAAAGCAGCTGTGGAGAAAACAGTGATGTCATCATTAGGTCAGTTCAGCTCTCTTTTGATTGTGTCACTGCAGTCAGATCAGTAATATTGCTGAATATTAAGTGTCTATACAGTGAGCAAATTCTGACGTTGATGTATATATTGTGTGCCGGAGAGGGTATTTAATAATTTAGTTAATTTTGTATTATTTTTATACTATTATAATATGTATTCATATTTTGAATTAGCTTTTATTTTTATATTTTCGGTTTTCTTTTTAATTTTAGTTTAAGTAATTTTGTTATGTGCTTTCGTCAATTTTATCTGTTATATAATATATATATATTAGGGCTGGGACAGTATATCGATGCATCGCGATCTGTGAATTTTCCAAATGCATCGCAAATCGATTCTGAGCTTAGTTTTTAACAGCAGATGGCGCTCTAGGCTAATTTTTAACCACATGCTTAAATGCTCACAAAGAAGAGCACTCGTGCGTTCGGCTGAGTCTGAGAATGTACTTGCACCTCAGAATGCTTTTATGATGCGAGATTAATGTAAACAGCCCTTGTAATTCACATTTCGAACTTTATGAATGAATAAGGTTCAAGTGGTGTGTGTAAGGAATTGAAAGGAAGCAAAGTATACTTTCTTTTATTTTTATTTCAGTTTTAGTTGTAGTAATTTTAGTACTTCAACTAAAACTTTTATTTCAGTTAAGTTTTTTATGCTTTTACTGGGGATTTCCATCATTTAGTATTATTTTTACACTATTATAGTATGTATTAATATTTTGAATTAGCTTTTATTTTTATATTTTCAGTTTTCATTGTAATTTTATTTTAAATAATTTTGTCATTTTTATCAGTTTTTTTATGTATGTTTCTGAATATCTTTGTTTTATTTTTATTTCAGTTACGTTTTTTTTATTATTATTATTTTATTGGGGATTTCCATCATTAATTTAGTATTATTTTATCCATTATTTAGTTTAAGTTTTGGTCATTTTTACTAGTTTATATTTTTACTGGGTTATATGACTTTCTTCTTTCAGACGAACACAATCGGGTTTACTGTGGGAGATATATATATATATATATATATATATATATATATTATTTACGTTTTAGTACTTCAGCTTATTTTATTTCCGTTATTTGCCGAGGCACTAAATTCTAAACTCCATTTCTAAATTCTGTTAAATATAAGGTTTTTTTATATTTAAGTTTTTCATGTAATATTTATATTCATATTTTCTTTTCTTTTTTCAGCTTTATTTCAGCTAACGAAAACTATTTTTAATAGTTTTACTGTAGTTAACAAACAGTAATTTTAAGCAAACTTAAAATATTTGTCAGTCAGACCTTAAATATTTCCTCTGAGATTTTAAGTAAATATTTCAATAATTTAATAATGCTTTAGTTCATAGTTCCATTAATGGTCACATGCCATGCAAGTAAACAAATACAATATTTCATCTTTTTTTTTTTTTTAATTTAAAAGTATTTATTTATTTTAATTATACATTATTATGGCTTAATTATTAGCTTTTCATCAACTCGTGAACCCCTGCGCTAGTGGTTTGGGATTGTTCACTTCTCATTGCGGTGCATTCTGGGATTGAATGAGTGCTTGTTTGATAATATGGTGTGTGACTACAGTAAGTGTGAGGTGTGTTACTGAGCCTCAGCCACAGGGGGGCACAATCAGGCTGGACAATTCAAGATAGTTCAGATGAATTTATGGTATGTCAGAGGTTTCCTTCCTTCTTTCATGTTCCATAACAAACTTCAAGCTGTTTTCATTCAGTTGTATTTGAGTCTTTGGTTGTTGTCATGCAGCATCTTATATGACCATGTCATGTCCTGTATGTTCTGTGATCACATTTTTAAGCTGTTTTGATAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU406313 lncRNA downstream 123789 419752 ~ 420378 (-) True G356368
TU406304 lncRNA downstream 124628 417635 ~ 419539 (-) True G356364
TU406307 lncRNA downstream 132227 399775 ~ 411940 (-) True G356365
TU406287 lncRNA downstream 200103 343220 ~ 344064 (-) True G356348
TU406274 lncRNA downstream 259818 263515 ~ 284349 (-) True G356337
TU406335 lncRNA upstream 29990 582941 ~ 584099 (-) True G356384
TU406344 lncRNA upstream 63269 661363 ~ 661564 (-) True G356390
TU406329 lncRNA upstream 99736 652687 ~ 656083 (-) False G356382
TU406330 lncRNA upstream 99736 652687 ~ 656083 (-) True G356382
TU406382 lncRNA upstream 116872 669823 ~ 670087 (-) True G356423
CI01000147_00491199_00512572.mRNA mRNA downstream 30952 491199 ~ 513215 (-) True CI01000147_00491199_00512572
CI01000147_00482393_00489991.mRNA mRNA downstream 54176 482393 ~ 489991 (-) True CI01000147_00482393_00489991
CI01000147_00426318_00471016.mRNA mRNA downstream 73151 426318 ~ 471016 (-) True CI01000147_00426318_00471016
CI01000147_00252331_00335060.mRNA mRNA downstream 209107 252147 ~ 335060 (-) False CI01000147_00252331_00335060
CI01000147_00231088_00236774.mRNA mRNA downstream 307393 231057 ~ 236774 (-) True CI01000147_00231088_00236774
CI01000147_00586020_00603643.mRNA mRNA upstream 32897 585848 ~ 606212 (-) True CI01000147_00586020_00603643
CI01000147_00614373_00614621.mRNA mRNA upstream 60836 613787 ~ 616428 (-) False CI01000147_00614373_00614621
CI01000147_00631877_00639420.mRNA mRNA upstream 77633 630584 ~ 639420 (-) True CI01000147_00631877_00639420
CI01000147_00700597_00701633.mRNA mRNA upstream 147175 700126 ~ 702455 (-) True CI01000147_00700597_00701633
TU406246 other downstream 287297 248563 ~ 256870 (-) False CI01000147_00252331_00335060
TU406180 other downstream 493268 48047 ~ 50899 (-) False G356274
TU406141 other downstream 504325 14927 ~ 39842 (-) True G356249

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018703 True 1506 mRNA 0.53 10 NC_007126.7 45338623 ~ 45356635 (-)