RNA id: CI01000149_00249452_00257784.mRNA


Basic Information

Item Value
RNA id CI01000149_00249452_00257784.mRNA
length 1092
RNA type mRNA
GC content 0.57
exon number 4
gene id CI01000149_00249452_00257784
representative True

Chromosome Information

Item Value
chromosome id CI01000149
NCBI id null
chromosome length 698166
location 249287 ~ 257784 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAAATGTTGAGGACAGCAACGACATGTTACCTAAATCAAGACGAGCTCTCACCATTCAAGAGATCGCAGCGCTGGCTAGATCTTCACTTCACGGTATCTCGCAGGTGGTCAAAGATCATGTGACGAAGCCCACGGCGATGGCGCAGGGGCGCGTGGCCCACCTGATCGAGTGGAAGGGCTGGTGTAAACCCACCGACACTCCCAGCGCTCTGGAGTCCCACCTCACCTCATACTCTCATCTGTCCGAGGGCGAGCAGGAGGCGCGCTTCGCTGCCGGGGTGGCAGAGCAGTTTGCCATTGCGGAGGCAAAGCTTCGTGCCTGGTCTTCAGTGGATGGGGACGAGTCTAACGATGATTCTTACGATGAAGATTTTCTACCTGCAAATGATCCCGTTACACAGAGCACAGATCTGTCCTCGTACCCTCATTACCTGAGGGATCTATTACACACTCAGGTGTGTCAGGCTCACCTGCGGGGTCGAGGTCTGTGTGAGGCCGAGAGCGGGGTGGGAGCTGACCTTTCACCTCCTGTGGGGTCACCGGGGTCGCCGTCGGAAACGCTCTGCTCCAGCATGTACAGCTTGGACGAGAGACACCCGTTGCTGCGGGACCTCGGCCGCCACGTGGACTCGCCCGCCGCCGACCTCACCGCCAAGATTCTCAGTGCTCTTCAGGGAGGGGAGGAGCTACTGTTGGCCCGCCTACACAGGGCGGGGCACAGACGAGGCCACTCCCCCTGTTGCTTGGAAACATATTCCGAGACATTCGAAGACGAGGACACGCCTTGTAAGGACTGTGGAGGCGGAGTCTGCCTTCCGCCTGAATATTCCGCACGTAGAAAGGTGTCGGACGTGGCCTCGTCTGGCATCGTCTCGCTCGACGAGGAAGACGTGGACGCGGAGGAAGAAGAGCGAGAGGAACAGTGACGTCTCTCAGCCTGACGTGACGTGCATGTTTATTTTGGACTCCGCCCACTAATTTGCATTTTGCTCCGGGCGTCACTTGCTCTCGTGGTTTGAACTTTTAACTCTGTTTTTTCGTTATCGACTTTCAACGCGAGACTGAATTTTGGTTCTCAGGCTCTCAAAAAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU406716 lncRNA downstream 1920 247117 ~ 247367 (-) True G356646
TU406708 lncRNA downstream 2289 245687 ~ 246998 (-) True G356638
TU406778 lncRNA downstream 4265 240410 ~ 245022 (-) False G356702
TU406779 lncRNA downstream 4408 240410 ~ 244879 (-) True G356702
TU406769 lncRNA downstream 14731 196726 ~ 234556 (-) True G356695
TU406713 lncRNA upstream 7812 273673 ~ 276712 (-) True G356643
TU406785 lncRNA upstream 34210 291994 ~ 292394 (-) True G356705
TU406735 lncRNA upstream 49313 307097 ~ 391185 (-) True G356665
TU406710 lncRNA upstream 79546 337330 ~ 349935 (-) True G356640
TU406730 lncRNA upstream 87397 345181 ~ 348422 (-) True G356660
CI01000149_00235452_00239648.mRNA mRNA downstream 9639 235016 ~ 239648 (-) True CI01000149_00235452_00239648
CI01000149_00174236_00174609.mRNA mRNA downstream 74349 174058 ~ 174938 (-) False CI01000149_00174236_00174609
CI01000149_00079870_00099787.mRNA mRNA downstream 149500 79843 ~ 99787 (-) True CI01000149_00079870_00099787
CI01000149_00069577_00072224.mRNA mRNA downstream 177063 69577 ~ 72224 (-) True CI01000149_00069577_00072224
CI01000149_00264412_00270120.mRNA mRNA upstream 6454 264238 ~ 270122 (-) False CI01000149_00264412_00270120
CI01000149_00293474_00304559.mRNA mRNA upstream 35633 293417 ~ 304559 (-) False CI01000149_00293474_00304559
CI01000149_00308436_00325498.mRNA mRNA upstream 50482 308266 ~ 325498 (-) True CI01000149_00308436_00325498
CI01000149_00327010_00330523.mRNA mRNA upstream 69226 327010 ~ 330523 (-) True CI01000149_00327010_00330523
CI01000149_00354217_00363368.mRNA mRNA upstream 96181 353965 ~ 363368 (-) True CI01000149_00354217_00363368
TU406759 other downstream 74607 173735 ~ 173918 (-) True G356685
TU406703 other upstream 39530 297314 ~ 304601 (-) True CI01000149_00293474_00304559

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018694 True 1584 mRNA 0.49 5 NC_007126.7 44559448 ~ 44601331 (-)
bowfin (Amia calva) AMCG00009144 True 819 mRNA 0.61 4 CM030126.1 27077814 ~ 27087858 (+)