RNA id: AMCG00009144


Basic Information

Item Value
RNA id AMCG00009144
length 819
RNA type mRNA
GC content 0.61
exon number 4
gene id AMCG00009144
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27077814 ~ 27087858 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACCGAGTAATGGCAGCTTCAgtaAATGAAGACACTACCGACATGTTGCCAAAATCAAGAAGAGCTCTCACCATTCAGGAGATCGCAGCCCTGGCCAGGTCTTCGTTACATGGCATCTCCCAGGTGGTGAAAGACCATGTGACAAAGCCCACGGCGATGGCGCAGGGCCGGGTCGCACACCTGATCGAGTGGAAGGGCTGGTGTAAGCCCACCGACTCCCCTACCGCCCTGGAGTCAGACTTCAACTCTTACTCAGACCTCACTGAAGGGGAGCAGGAAGCGCGATTCGCTGCAGACCCTGTGGCCCCTTTCCCTCACTACCTGCGGGACATACTGCATAGCCATGTGTGTCAGCAGAGGAGCTCGCGGCCGGGGTCGTGCGAGCAGGAGAGCAGTGACCCCTCGCCCACTATCTCCCCGGACACGCTGTGCTCCAGCCTGTGCAGCCTAGAGGACCACCCCCTGCTCAAGGACTTGGGCTCGTCCCCTGCAGACCTGGCCGCCAAGATCCTGGGGGCCCTGCAGGGTGGTGAGGAGCTGCTGTCGCGGCTGCAGCGCAACGGAGAAAGTGCCTTCCGGAGCCTGGGACACATGGTCTGCGAGGACTCCTCATACTCCGTCTCCTACACCGAGTCCTGCTTCTCCCCCGAGGACGAGGAGGACCTGCCCTGCAAGGACTATGACTCAGTGTGCAAGGACGAGTATGGCTACCCAGGCCGGAGAAAGGTGTCCGATGTGGCCTCCTCAGGAGTGGTGTCCctggatgaggaggaggaggaggaagacgaggGTGAGGCGGAGGAAGGGAACGAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68587 lncRNA upstream 93657 26982843 ~ 26984157 (+) True G54880
TU68536 lncRNA upstream 226811 26849222 ~ 26851003 (+) True G54833
TU68512 lncRNA upstream 252885 26822296 ~ 26824929 (+) True G54812
TU68500 lncRNA upstream 263322 26810651 ~ 26814492 (+) True G54806
TU68641 lncRNA downstream 8679 27096537 ~ 27096773 (+) True G54928
TU68649 lncRNA downstream 23022 27110880 ~ 27117923 (+) True G54936
TU68661 lncRNA downstream 226097 27313955 ~ 27317157 (+) True G54948
TU68662 lncRNA downstream 231910 27319768 ~ 27319971 (+) True G54949
TU68663 lncRNA downstream 234091 27321949 ~ 27322190 (+) True G54950
AMCG00009146 mRNA upstream 18854 27037329 ~ 27058960 (+) True AMCG00009146
AMCG00009145 mRNA upstream 44857 26994958 ~ 27032957 (+) True AMCG00009145
AMCG00009140 mRNA upstream 95963 26969885 ~ 26981851 (+) True AMCG00009140
AMCG00009139 mRNA upstream 174542 26898609 ~ 26903272 (+) True AMCG00009139
AMCG00009130 mRNA upstream 241397 26830199 ~ 26836417 (+) True AMCG00009130
AMCG00009147 mRNA downstream 14638 27102496 ~ 27104891 (+) True AMCG00009147
AMCG00009150 mRNA downstream 276447 27364305 ~ 27377706 (+) True AMCG00009150
AMCG00009154 mRNA downstream 296910 27384768 ~ 27389302 (+) True AMCG00009154
AMCG00009153 mRNA downstream 315430 27403288 ~ 27416448 (+) True AMCG00009153
AMCG00009152 mRNA downstream 373372 27461230 ~ 27477658 (+) True AMCG00009152
TU68288 other upstream 1490204 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 2159951 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 2261280 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 3101908 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 5783913 21292241 ~ 21293901 (+) True G53917
TU68775 other downstream 525725 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 1678596 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 1841034 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 2015782 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 2015782 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU24398 True 422 lncRNA 0.43 1 CI01000002 1162460 ~ 1162881 (+)
grasscarp (Ctenopharyngodon idella) CI01000149_00249452_00257784.mRNA True 1092 mRNA 0.57 4 CI01000149 249287 ~ 257784 (-)
eurasian perch (Perca fluviatilis) TU24398 False 1283 TUCP 0.50 5 NC_053113.1 18132087 ~ 18151968 (-)