RNA id: TU69269


Basic Information

Item Value
RNA id TU69269
length 3047
RNA type TUCP
GC content 0.42
exon number 3
gene id AMCG00009208
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29103608 ~ 29108227 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTCGAGTGAAACCCGAGTTTAATATAATGTGAAATGCTCATTGGATTTTTATATTAACAGTAGTCAGGGCGTATTTTACCATGTGATATGacaattgtttcctttcagtttgAAATCGAGTAAAGGTACATATGAAGAGCATGTTTGTACTTTCTAAATTGGTTTctggacaacaacaaaaaggggAAACACCGCTAATCAGGAACCCGGAAACATTTGTTGTGCAACACTGATACAAAAGTTGCTGAAGTAAAGAACATTTGTATTGTCTGATGTGATTAGTACTGCCTTTGGATCTTAAATCAAGAGCCGGTTTACTGTATAGTGCATGGCTAAAATGGAGTGGAAAGATTTCTGGACCCGTAGAAAATTAGAGGAACTTTGCAACATGTGGGAGGCGAAGCCGTCTCTGTACAACCCTAAAGTACGCGAATATCACGACAGATGGTGCAGAAAACACGACTCCGAAGAGATCGCGCAGACTCTGGGTACAACGGGACATGaagtgcttaaaaaaataaaaaatctcaaaaCCCAATATGCCCGGGAGCAGCGAAAGGCAGCCAGTGCTAGGAGCGGCAGCGGAGAAGTGTCCCTGTCGAAGTGGTATCTGCTCCCGCTGTTGAAATTCCTGGATGTGTTAATTGACTCCAGTCCAAAGGCTGCCCATCTCGGTGGGTACGAGGTGAGTGTAACCCGTATGCCCGACTAGTGCGCGGCATTATCCCTAGGAGCAGAGCCAGCGCATGCGTCGTTGCGAATGAAGCTGGCGTCCTGGCGGCGCAGtgctgcagaattccaccgatccgattggcggagcagcgcagacctgcggaGAGTAGAAGACGATACACAGTCTGCACAAATGGCGGGGCAttgttaaaatagttttctcGCTGGGCCATATTCCAGGTTGGTCGGTATCCTTTTTGAAGGTTGTTTGGCGGCGAACTGTTGTGCTTTGTTCACAGCTGAGGCGTCTGTTTTTAGGAGCAAACCCAACCGTGTTAGTCGGGCCTTGCAACATATCTGAAGCAGAAGCGGGTTGTGGGCGTAATGGTCTGTAatcgtgttgttgttttttaagtgtgaCTTGATTTACATGTGTAAATGGTATTAAAAGAGAAGGAAACCACTTCTGTCTGCCCTTCTCTTTGCAGCAGACTAATTGTCAAAAACCTAACTGGAAACACAATGCAAACCATAGGACACAGTTTAATTCATTGGGATTGGAAGCAGCAAAAACTCTATGAACTGATATAATTCTTCAACTGAACTGACCATACAGTGGAAATGGACTTCTTTAGCGGTTTTAACATTATAACTTCACATGTAAATACTAGCCAAATAGGGACAAGACATGTGGGACACATCTGAATATCAATTACAATCAATTGGTTTCTAATACAATAGAAACTTTGTGTTAATGAACAgagctttctttaaaaaagcagCAAAACTTAACACGTTGgcggaaaaaaaaagcaaaaatgcaagctggaaaaaaagcttttatttacCAGTACCCTTGCCAAAAAATAAGCCTGCCATGACCTGCATTTGGCATATACCAGCAATATTGCAGCAACCTGTAATTGGAAAACTCACAATTTGTCATGCAAATTAGGTTGCTGCAACCTTTCTCTTGCAATCAGTTATGAAAAAGTTATCATTGTTATTCACATTTCACGTGAATAACGATAACCTTTCAGCAGGTCAAACTACTGAGAAACAGTTTAGAATGATTAAGTatggtggggaaaaaacaagtgTCGATTATGTGTGACAGCAGTCGCTTGCTTCTCTGGTGAAAGTGGCAACCGAATGAGCCGATCCACACTGCTGTCCTGGCTCAACTCAGGACTGTGGGTGCCGGGATTAGAGGGTAGGCATCAGCCATGGACACTGATCTAAATGGACTTTAAGCACTCCTGGACTAcccaaagttattttaaatagagtAGTGCAGGACTGGTACTAAACAAGGTCTGTGGAAACCAGCTTTTAAAATACCGGATCATAACAGTACCCACCAGGCTGCAGATGAAATAAATGTGGAAGTGTCAGAAGACAAGCACGATGTGAGTGAAGAGGACAGGGACGCAAAAAGGCCTCGGCTATGTTTACCAAAACGACCAACGAACAGTGACATCCATGTCAGATTAGCCCATGACCGGAAAAGAATAGCGTGCGAGAAGACCTTCTTTGTCACGGCTGCTTCATACATGAAATCGTTGTCGGATAATATTGAAAAGGCTAAGAGAGTCTCCCAAGATGATGCCTTTGACATTTTTGGCAAATACGTGGCGTCGGAACTGAGACTAATGGAGGATGCCCAAATGCAGAAAATGGCAAAGCTGCGTATCCAGCAGGTCTTGATCGACGTCCAGTCAAGTTCAACCAAATCCCAGCTTCCTGTACCCGTGCACGTGCAGCCTCCGTGTGCCGCCAGTGCCAGCGACAGCCCTGCTCTTTCAGTGGGCCCGGTTATTTCTTCAGAGCCTCCCTTTACAAACAACTGTGCTGAAACGGACATTAAACTGAGTGAGATGGAAGTGAAAATCTTAGATCACTCCTATCCCTCAACCTTTCACTACGACACATAGGTTTCAGTAACTACTACATCAGGAACAATCAGGGTCATGTATGCTGTGCTTTGGAAATATGTTTTGGGTTACGTAAGatattccccccaaaaaatacacatttactgCAATAGTTTtggaatatatatgtaatatgtaagtGTGAAAGTCTATATATGCACTATATATACCAAGGAGGCAATAAAGAAGTGAGGTCCTATTTACAGTAAATCTGTATCtaattagaaaatgtgtatgtCATATAAATActaagtaaaaaatacaaaagtgtgGTATAAGGAGCAGGTGGAGAGTCAAATCTTGAAATATCCAGAGACTTTGTGGAGCTAACAGTTCTGTTTTTACTGAAAAAGatttctttgtattgtttttattaatactgtCCAATAAAACATTAGAtgtaatcaataaaacaaaaacaaagttctaaaatgccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69229 lncRNA upstream 72162 29029318 ~ 29031478 (+) True G55394
TU69185 lncRNA upstream 204947 28897976 ~ 28898693 (+) True G55357
TU69110 lncRNA upstream 470308 28632355 ~ 28633332 (+) True G55308
TU69101 lncRNA upstream 473343 28627663 ~ 28630297 (+) True G55300
TU69038 lncRNA upstream 638414 28464562 ~ 28465226 (+) True G55257
TU69310 lncRNA downstream 78013 29184921 ~ 29185184 (+) True G55461
TU69312 lncRNA downstream 79786 29186694 ~ 29187955 (+) True G55463
TU69342 lncRNA downstream 351513 29458421 ~ 29458743 (+) True G55487
TU69374 lncRNA downstream 534581 29641489 ~ 29641936 (+) True G55512
TU69445 lncRNA downstream 751387 29858295 ~ 29932152 (+) False G55564
AMCG00009214 mRNA upstream 1563 29075081 ~ 29102077 (+) True AMCG00009214
AMCG00009202 mRNA upstream 83748 29014392 ~ 29019892 (+) True AMCG00009202
AMCG00009207 mRNA upstream 119320 28982329 ~ 28984320 (+) False AMCG00009207
AMCG00009206 mRNA upstream 176812 28910313 ~ 28926828 (+) True AMCG00009206
AMCG00009203 mRNA upstream 210596 28867586 ~ 28893044 (+) True AMCG00009203
AMCG00009220 mRNA downstream 64415 29171323 ~ 29174731 (+) False AMCG00009220
AMCG00009221 mRNA downstream 201948 29308856 ~ 29309773 (+) True AMCG00009221
AMCG00009218 mRNA downstream 259730 29366638 ~ 29402226 (+) True AMCG00009218
AMCG00009219 mRNA downstream 309528 29416436 ~ 29419290 (+) True AMCG00009219
AMCG00009225 mRNA downstream 354577 29461485 ~ 29470524 (+) True AMCG00009225
TU69199 other upstream 91872 28928892 ~ 29011768 (+) True AMCG00009207
TU69158 other upstream 326019 28766454 ~ 28777621 (+) False AMCG00009204
TU68775 other upstream 1486262 27613583 ~ 27617378 (+) False AMCG00009164
TU68288 other upstream 3516030 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 4185777 24915029 ~ 24917863 (+) False AMCG00009088
TU69299 other downstream 66231 29173139 ~ 29174700 (+) True AMCG00009220
TU69455 other downstream 801003 29907911 ~ 29911564 (+) True G55573
TU69474 other downstream 888218 29995126 ~ 29995438 (+) True G55591
TU70069 other downstream 3054852 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 4893888 34000796 ~ 34031445 (+) True G56368

Expression Profile