RNA id: TU69110


Basic Information

Item Value
RNA id TU69110
length 612
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G55308
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 28632355 ~ 28633332 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tTACACAATTTCagcatgtctttattttttcaatttcctTTACAATACAGAAGTCCATTTCAGGTGGACTTTGTCTCCTTAAGACCCAAGTGGGCTGAAATTAAGGAGGAACAGGAACAGTTaaggttttcattttgtctACGTGTAAtcctgcagttttatttcacaAGCATCCATCAAGTTGGTCTCTTCTGTCGTTTCTTAGAGAAATACAGATGCCCTCAGAGGTGGCCGCAAGTCCCTCTGCAGCTACTCCCCCTGTTCGGATAGCGTGTGTCTGTGGGAGTCCCGGCAGTCTCCTCTCTCTACACCTTGCTCTTGTGACAGTGTTTGAGTGCGTCTCCCAAGGCCTGGAGCACTAGGTCTGCGTTGCTCTTGCTGCAGTTATATCCCATCAGCCCCACACGCAGCACCTTGCCCACAGAGGGCCCCAACCCCCCGGTGATCTCCATGCTGTGGTGTTTCATAACGTAGGTTGTGATCTCCTTCCAGTCGTACCCCTGGGGCACAGCAATGGTGGTCACCGTTGGGAGCCTCATGCgCTTGTCTTGTACAAAGAGCTTTAGACCAAGGTTTTCCAGCCCTTTGTACAGGTACTCTGCCACTTCCTGG

Function

GO:

id name namespace
GO:0050662 obsolete coenzyme binding molecular_function
GO:0048037 obsolete cofactor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69101 lncRNA upstream 2058 28627663 ~ 28630297 (+) True G55300
TU69038 lncRNA upstream 167129 28464562 ~ 28465226 (+) True G55257
TU68978 lncRNA upstream 248852 28383000 ~ 28383503 (+) True G55205
TU68977 lncRNA upstream 251056 28380980 ~ 28381299 (+) True G55204
TU68976 lncRNA upstream 251600 28380392 ~ 28380755 (+) True G55203
TU69185 lncRNA downstream 264644 28897976 ~ 28898693 (+) True G55357
TU69229 lncRNA downstream 395986 29029318 ~ 29031478 (+) True G55394
TU69310 lncRNA downstream 551589 29184921 ~ 29185184 (+) True G55461
TU69312 lncRNA downstream 553362 29186694 ~ 29187955 (+) True G55463
TU69342 lncRNA downstream 825089 29458421 ~ 29458743 (+) True G55487
AMCG00009191 mRNA upstream 5186 28619193 ~ 28627169 (+) True AMCG00009191
AMCG00009187 mRNA upstream 21769 28599918 ~ 28610586 (+) True AMCG00009187
AMCG00009192 mRNA upstream 35905 28593147 ~ 28596450 (+) True AMCG00009192
AMCG00009190 mRNA upstream 68247 28544328 ~ 28564108 (+) True AMCG00009190
AMCG00009189 mRNA upstream 116504 28510563 ~ 28515851 (+) True AMCG00009189
AMCG00009199 mRNA downstream 43265 28676597 ~ 28723790 (+) True AMCG00009199
AMCG00009201 mRNA downstream 96064 28729396 ~ 28735853 (+) True AMCG00009201
AMCG00009200 mRNA downstream 102951 28736283 ~ 28755174 (+) True AMCG00009200
AMCG00009198 mRNA downstream 123223 28756555 ~ 28762518 (+) True AMCG00009198
AMCG00009204 mRNA downstream 134290 28767622 ~ 28799600 (+) True AMCG00009204
TU68775 other upstream 1014977 27613583 ~ 27617378 (+) False AMCG00009164
TU68288 other upstream 3044745 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 3714492 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 3815821 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 4656449 23883317 ~ 23975906 (+) True G54263
TU69158 other downstream 133122 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 295560 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 470308 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 470308 29103640 ~ 29106908 (+) False AMCG00009208
TU69299 other downstream 539807 29173139 ~ 29174700 (+) True AMCG00009220

Expression Profile