AMCG00009198


Basic Information

Item Value
gene id AMCG00009198
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 28756555 ~ 28762518 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009198
CTAAAAATAGCGGGGAGAAAGGCAAGCACACTGTGTCGAAATGACTCGGCACAAGTTTACTACATGTTGCCAATTCCCAAGTTTTATATCAACCACGTTTTGGCCTCCTGAAATTGTTTCCCTAAGATGTGAAGCTGGTTCCAGCCATCGCACAGGAAAATACTAACAAGCTCAGCTGTGAGGCCCTGGTCactgaaaagataaaaaagaatTGGAGTGAAGGAAAGACCATGGTGCGCAATGTGGACGACCTGGACTTCTGTATGTCATCTCACCCGCAGAGCATCCTGGAGGGGCTGCGCTCCCTGTGCTCACACCCCAAACTATTTGACGTGACCTTGAGCATAGGGGGGCGAGAGTTCCCCTGCCACCGCAGTGTCCTGGCCCTCTGCAGTCTGTACTTCCGCTCCATGTTCTCAGGGGACTTCGTGGAGAGCATCTCTGCTCGTGTGGAACTGCAGGACGTGGACCCCGATGTCCTGGCCACTCTATTGGACTTTGCCTACACTGGCAAACTCACTATCAACCAGGGTAACGTAGAGGGCCTGATTAGCACCTCCAGCCAGCTGCAGTTTGCGGCTGTGCGTGCCGTTTGCAGCCGCTACCTCCAGCACCAGATCGACGCCACCAACTGTCTGGGCATCCTGGAGTTCGGCGAGACACATGGCTGCCCAGAGGTGGTGGCGAAGGCCAGGGGCTTCCTCCTGGAGAACTTTGAGGCTGTGGCTCAGGGAGAGGAGTTCCAGCTACTACAACTAGATCGGCTGATGGCCTTCCTCTCTGATGACAGGCTCCAAACACGGGACGAGCGCAGCCGGGTGGAAGCGGCTCTCTCCTGGGTGAAGTGCGACGAGGCTTCCCGTGCCCAACACCTCCCTAAGCTGATGAGCCTGGCACGACTCTCTCTCCTGCCCCGGGAGTATCTCACTGACACCTTGCTTAAGGACAGCCTGGTCATGGGGTCTTCAAGCTGCAGGGAGGCTATAGAGAGGATCCACAGGGAAATGGAGTCGGACCCAGGAGTGTTGATGCAGAGCGGCTCCCATAGTCCTCAGCCCAACCTACAGGAGGTGCTCTTTGTAATCGGAGGGTGCTCGCTGGACGACTCTGACGACGATGACgaggaggaagagcagcagcagccgaGGCCAGTTCACAGGAACACTGCCTTCTATTCCACAAGGACCAGACAGTGGAATCTCCTCCCAGATTTCCCAGACTACAATAAATGGGGCTATTCTGTAGTTTCCTTGAACAATGATGTGTACATCACAGGGGGCTCAAGAGGCTCACGCACCAACACCTGGTCAACCACCCAGACCTGGAGGTACATCACGCAAGAGGGGAAGTGGGTCACAGTTGCTCCCATGCTGAGGCCCAGAACCAATCACTGCTCGGCTGTGCTGAACGGGGAGATATACGTCATTGGAGGCACGACTCTGGATTACGTGGAGGTGGAGCACTACGACCCCTACAGTGACAGCTGGTCTCTCACTGGCCCCACCCTGAAATATGTCACCAACTTCACGGCGACCGCCTGCATGGGAAAACTGTACGTCATTGGTTCTTGTGCAGTCAAGTACAATGTTCTCACCTTGCAGTGTTACAACCCAGTAATAGATGGCTGGAGTATCATTGCCTCTCCTTTCATCCCTAAGTACCTGTCATCCCCTCGCTCAGTCGCCCTGGATGGCCTTATCTATCTGATTGGGGACAACACCAAGAAGGTGTATACATATGACTCTGAGGCCAACATGTGGCAGAAGGTCCAGCTACTTCACACTCTCCATGAGAACGGGAGCATGGTGGTGCTGGGTGGACAGCTGTACGTGACGGGTGGGCACTGGAAGGGTATGGATGGGGAGTACCGAGTGGAGGTGGAGGTTTACAACTGTGCCTCCAATGCCTGGCACATAGAGAGTTTGTTGCCAAGACTTTGGTCTTACAGTGGCTCCTGCTCCATCTTTCTCGACCCCTCTCAGTGGACCGAGCCCTTCCCTCTTGATGAGACCTAGGGGACCTGCCCATCGTGGCCGAAGCTCTGCAGAGCGTCTTAGGCCGGAGTCTAGACTGGTCAGCGCACAGACATTGATTCACATTAGGCCAAATGTACCGCCCACTCTTTCAgatttgttgatgttgttacaggtaaaacaaacactaaaaaacACTGTCAGTACTGTTAAACGTTGCAGTCATGAATTTGTATATATCTATCTAGAAAGAGTTGACTTGTTGACAGAAAGCGAACCATTGAATGTATCCCAAAGTAAAAATTGACAGAGACACTGAACAGGTcagttttattgtaatattaacAAGCTTCCTGTAGGAAATCAGTGTTTGACCTTTTGATCAAATGAGTATGGCCTTTCTATGTAAACAAAGCATTCTGGTGTAAAagcaaataattacttttaacatAGTCACTGTCAGTATCAGGAGACAATAAAACTGCATTTAGATGCTTTGATTTTCGTTTGTGTTCATACATAGTtgatagttttatatttaatattttaatcacattatGTAATATCCATAtaatgtttcttctgttttgtttaccattaaaacaatacacttgTTATA

Function

GO: NA

KEGG:

id description
K10466 KLHL30; kelch-like protein 30

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009198 True 2592 mRNA 0.50 8 28756555 28762518

Neighbor

gene id symbol gene type direction distance location
AMCG00009200 espnl coding upstream 1381 28736283 ~ 28755174 (+)
AMCG00009201 NA coding upstream 20702 28729396 ~ 28735853 (+)
AMCG00009199 LOC108241196 coding upstream 32765 28676597 ~ 28723790 (+)
AMCG00009191 atg4b,atg4a coding upstream 129386 28619193 ~ 28627169 (+)
AMCG00009187 bok,LOC106574198,LOC106560644,LOC107733256,LOC107752647 coding upstream 145969 28599918 ~ 28610586 (+)
AMCG00009205 NA coding downstream 40451 28802969 ~ 28836412 (+)
AMCG00009203 ryk coding downstream 105068 28867586 ~ 28893044 (+)
AMCG00009206 NA coding downstream 147795 28910313 ~ 28926828 (+)
AMCG00009202 NA coding downstream 251874 29014392 ~ 29019892 (+)
AMCG00009214 LOC106599142 coding downstream 312563 29075081 ~ 29102077 (+)
G55308 NA non-coding upstream 123223 28632355 ~ 28633332 (+)
G55300 NA non-coding upstream 126258 28627663 ~ 28630297 (+)
G55257 NA non-coding upstream 291329 28464562 ~ 28465226 (+)
G55205 NA non-coding upstream 373052 28383000 ~ 28383503 (+)
G55204 NA non-coding upstream 375256 28380980 ~ 28381299 (+)
G55357 NA non-coding downstream 135458 28897976 ~ 28898693 (+)
G55394 NA non-coding downstream 266800 29029318 ~ 29031478 (+)
G55461 NA non-coding downstream 422403 29184921 ~ 29185184 (+)
G55463 NA non-coding downstream 424176 29186694 ~ 29187955 (+)
G55487 NA non-coding downstream 695903 29458421 ~ 29458743 (+)
AMCG00009164 NA other upstream 1130544 27613583 ~ 27626011 (+)
AMCG00009129 NA other upstream 1959787 26793537 ~ 26796768 (+)
AMCG00009108 NA other upstream 3168940 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 3262982 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 3838692 24898116 ~ 24917863 (+)
AMCG00009204 NA other downstream 3936 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 166374 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 341090 29103608 ~ 29108227 (+)
AMCG00009220 lsm2,LSM2,smx5 other downstream 408805 29171323 ~ 29174731 (+)
G55573 NA other downstream 1145393 29907911 ~ 29911564 (+)

Expression


Co-expression Network