G55205


Basic Information

Item Value
gene id G55205
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 28383000 ~ 28383503 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU68978
GCGACAGCAACACCATAAGCAATTTCTCCATAGGACATACAAGACATACCGAAGGAAACTAATACTTGAACTCAAATTTAATCTGACAAAAAGAAGTTAAAGAACTGTCACCgatattttttcacaaacaaaCGTCACAGTGACAGGGGAAAAGTAGCAGTTACATAATAAATGATCTGACCATATAATACCGAATATAATCACTTCCCGATGTATCATGTgattaagtaaattataaactACACAGGAAAATGCACTGTCACACGCCAGCTAAAAACAACAgttgattacattttccatgttttatttttattttattaagttaaaACAGCATCCGACTTCACTTACTCTGTATTCTTTTTAAACTATGTGACGCGATGTCGCTGTTCGGATACTACAAAATGTAtagtaacaaaaacaacacgCAATTGTACTCCACTGTTCAATTCATCCGCACCGCACCGCAAACCCGCGCAGATCACCAACGTGCTCGACCTCTCAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68978 True 504 lncRNA 0.37 1 28383000 28383503

Neighbor

gene id symbol gene type direction distance location
AMCG00009176 ephb3,LOC106613452 coding upstream 260968 28101690 ~ 28122032 (+)
AMCG00009175 NA coding upstream 522874 27842533 ~ 27860126 (+)
AMCG00009173 pcyt1a,LOC103040438 coding upstream 614833 27757223 ~ 27768167 (+)
AMCG00009169 NA coding upstream 649190 27732555 ~ 27733810 (+)
AMCG00009170 NA coding upstream 686336 27687885 ~ 27696664 (+)
AMCG00009177 NA coding downstream 2103 28385606 ~ 28387362 (+)
AMCG00009181 LOC101468118,LOC100701835,LOC102794991 coding downstream 20620 28404123 ~ 28405444 (+)
AMCG00009180 NA coding downstream 69247 28452750 ~ 28460154 (+)
AMCG00009188 sept2,LOC102290758,LOC102196852,LOC101486671 coding downstream 105553 28489056 ~ 28505796 (+)
AMCG00009189 NA coding downstream 127060 28510563 ~ 28515851 (+)
G55204 NA non-coding upstream 1701 28380980 ~ 28381299 (+)
G55203 NA non-coding upstream 2245 28380392 ~ 28380755 (+)
G55202 NA non-coding upstream 2630 28379515 ~ 28380370 (+)
G55184 NA non-coding upstream 57341 28325359 ~ 28325659 (+)
G54997 NA non-coding upstream 855506 27526067 ~ 27527494 (+)
G55257 NA non-coding downstream 81059 28464562 ~ 28465226 (+)
G55300 NA non-coding downstream 244160 28627663 ~ 28630297 (+)
G55308 NA non-coding downstream 248852 28632355 ~ 28633332 (+)
G55357 NA non-coding downstream 514473 28897976 ~ 28898693 (+)
G55394 NA non-coding downstream 645815 29029318 ~ 29031478 (+)
AMCG00009164 NA other upstream 756989 27613583 ~ 27626011 (+)
AMCG00009129 NA other upstream 1586232 26793537 ~ 26796768 (+)
AMCG00009108 NA other upstream 2795385 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 2889427 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 3465137 24898116 ~ 24917863 (+)
AMCG00009204 NA other downstream 382951 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 545389 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 720105 29103608 ~ 29108227 (+)
AMCG00009220 lsm2,LSM2,smx5 other downstream 787820 29171323 ~ 29174731 (+)
G55573 NA other downstream 1524408 29907911 ~ 29911564 (+)

Expression


Co-expression Network