AMCG00009175


Basic Information

Item Value
gene id AMCG00009175
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27842533 ~ 27860126 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009175
ATGACCTCAGAGGTTTCCGAGCCCTATCTGAGGGGCACGGTCTGGGCGGCGTGTAGACAGGCTCCGCCCCCTGCACAGCTGGAATGCGCGCGGATATATCCCACAACTCTGCACAGCTGGAATGCGCGCGGATATATCCCACAACTCTTCGCGCAAGACGAGACGGAACTTCCAGCCTCCAGTGGCGAGGAATGTGATCCGCGTCTGTGGTTTAATTGCACAGCCTGTCAAGCCAGCCGCACTGCATTGGTTGAACAGAACATGTGTTCATGGTCTTTAGCCCTAGGCAACATGTCCACAGAAGTTATCAAGCCCTGTCTGAGCGAAACGCAGGCCTCTGAGTTGGTGGGGCGTGTGTTTGGGTTGCATGTAGACAGGATCCACCCCCTGCCCAGCTATGACGATCAGAACTTCCACGTGGTGGTGAGCGGGGGTGGGGAGTACGTGCTGAAGATCATGAACTCCATGGACAGCCGTGACCCCGAGATGCTGGACGTACAGACCCATGCCATGATGTTTCTGAGGGAGAAAGGTCTTCCCACGCCCACTGTGCTCCCCACACTCCAGGGGGAGACCATGAGCCTCCAGGCCATCGATTGTGGCTCAGACTGTAAGCAGTATATTGTGCGGTTATTGACCTATATACCAGGAACACCTCTTGCCAAAATTCCCACCTCATCGCAGAGTCTGTTTGAAATGGAGCACCATCACCTCCAGAGACTGAACCGGGAGAACTTTATCTGGAGCCTGTCCAACGTCCACCTGCTGGAGCGCTATCTTACTGCAATGGACGGAGACCCCAGCCAGCAGGTTGTGAGAAACATTATCGAACTGTACAAGAGTCAAGTCCAGCCCAGACTGGGCTACTTCCGAAAGTGTATAAACCACGGGGATTTCAATGACCACAATATTCTGATTGAGCCAGAGAAGCCAGCTGAGGGCATCAACAGTAATGGTTTTGGGGAATGGcaacagcaggagcagcagcagaaacGCTACAGAATCTGTGGCGTCCTGGACTTTGGGGACATGTATTATGGCTATTACGTGTTTGAAGTGGCCACTACCCTTATGTACATGATGATTGAGAGCAAGCAGCCCCTGGAGGTGGGGGGTCCTGTGCTGGCAGGCTACGAGAGCGTGATCCCTTTGACCGCGGAGGAGCGGGATGTGCTGTACCTCCTGGTGCTGTGCCGCTTCTGCCAGTCACTGGTAATGGCGCGGCACACCGTGCTGCTGCATCCGGAAAATGAGGAGTACCTAATGATCACGGCACGCACTGGCAAAGGCCACCTACTGCGCCTCTGGAAAATGGGCAAGGAGGCACCCTGTCTGAATGAAACGCAGGCCTCTGAGGTGGTGGGGCGTGTGTTTGGGTTGCATGTAGACAGGATCCACCCCCTGCCCAGCTATGATGATCAGAACTTCCACGTGGTGGTGAGCGGGGGCGAGGAGTACGTGCTGAAGATCATGGACTCCTTGGACAGCCGTGACCCCGAGATGCTGGACGTGCAGACCCATGCAATGATGTTTCTGAGGGGAAAGGGGGAGGTCATGAGCCTCCAGGCCATCGAGTGTGGCTCAGACCGTAAGCAGTATATTGTTTGGTTATTTACCTATTTACCAGGAACACCTGTTGCCAAAATTCCCACCTCATTGCAGATTCGGTTTGAACTCGGGAGAATGGCAGCTACTGTTGACAAGATGGAGCACCCTCACCTCCAGAGACTGAACTGGGACAACTTTATCTGGAGCCTGTCCCATGTCCACCTACTGGAGCGCTATCTTACTGCAATGGACGGAGACCCCTGCCAGCCGGTGATGAGAAACATTATTGAACTGTACAAAAGTCAGGTCCAGCCCAGACTAGGCTCCTTCCGAAAAATTTCAGCTTTATTTAAATGGATACTTGGACAGGTCATAACAACAAAGCCTGTCTTCTCGGCAGGTATAAACCATAAGCCAGCTGAGGGCATCAACAGTAATGGTTTTGGGGAATGGcaacagcaggagcagcagcagaaacGCTACAGAATCTGTGGCGTCCTGGACTTTGGGGACATGTATTGTGGCTATTACATGTTTGAAGTGGCCACTAACCTTATGTACATGATGATCGAGAGCAAGCAGCTCCTGGAGGTGGGGGGTCCTGTGCTGGCAGGCTACGAGAGCGTGATCCCTTTGACTGCGGAGGAGCGGGATGTGCTGTACCTCCTGGTGCTGTGCCGCTTCTGCCAGTCACTGGTGTTGCCATGGCACACAGTTCTGCTGCATCCGGAGGATGAGGAGTACCTAATGATCACGGCACGCACTGGCAAAGGCCACCTACTGCGCCTCTGGAACATGGGCAAGGAGGCAGTGGAGCAGCTGTGGTTGGTTTTAGGTTTTACAATCTGTAAGaatacataa

Function

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG:

id description
K18201 AGPHD1; hydroxylysine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009175 True 2409 mRNA 0.54 12 27842533 27860126

Neighbor

gene id symbol gene type direction distance location
AMCG00009173 pcyt1a,LOC103040438 coding upstream 74366 27757223 ~ 27768167 (+)
AMCG00009169 NA coding upstream 108723 27732555 ~ 27733810 (+)
AMCG00009170 NA coding upstream 145869 27687885 ~ 27696664 (+)
AMCG00009163 rubcn,LOC105896451 coding upstream 171528 27660635 ~ 27671005 (+)
AMCG00009162 NA coding upstream 348008 27493401 ~ 27494525 (+)
AMCG00009176 ephb3,LOC106613452 coding downstream 241564 28101690 ~ 28122032 (+)
AMCG00009177 NA coding downstream 525480 28385606 ~ 28387362 (+)
AMCG00009181 LOC101468118,LOC100701835,LOC102794991 coding downstream 543997 28404123 ~ 28405444 (+)
AMCG00009180 NA coding downstream 592624 28452750 ~ 28460154 (+)
AMCG00009188 sept2,LOC102290758,LOC102196852,LOC101486671 coding downstream 628930 28489056 ~ 28505796 (+)
G54997 NA non-coding upstream 315039 27526067 ~ 27527494 (+)
G54969 NA non-coding upstream 419858 27420529 ~ 27422675 (+)
G54951 NA non-coding upstream 519738 27322540 ~ 27322795 (+)
G54950 LOC106613058 non-coding upstream 520343 27321949 ~ 27322190 (+)
G54949 NA non-coding upstream 522562 27319768 ~ 27319971 (+)
G55184 NA non-coding downstream 465233 28325359 ~ 28325659 (+)
G55202 NA non-coding downstream 519389 28379515 ~ 28380370 (+)
G55203 NA non-coding downstream 520266 28380392 ~ 28380755 (+)
G55204 NA non-coding downstream 520854 28380980 ~ 28381299 (+)
G55205 NA non-coding downstream 522874 28383000 ~ 28383503 (+)
AMCG00009164 NA other upstream 216522 27613583 ~ 27626011 (+)
AMCG00009129 NA other upstream 1045765 26793537 ~ 26796768 (+)
AMCG00009108 NA other upstream 2254918 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 2348960 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 2924670 24898116 ~ 24917863 (+)
AMCG00009204 NA other downstream 906328 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 1068766 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 1243482 29103608 ~ 29108227 (+)
AMCG00009220 lsm2,LSM2,smx5 other downstream 1311197 29171323 ~ 29174731 (+)
G55573 NA other downstream 2047785 29907911 ~ 29911564 (+)

Expression


Co-expression Network