AMCG00009173 (pcyt1a,LOC103040438)


Basic Information

Item Value
gene id AMCG00009173
gene name pcyt1a,LOC103040438
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27757223 ~ 27768167 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009173
ACTTCAGCCCCGGGGGAGACAGGCTGCTACACTCGGCACAGGATCCGGGTGAGTGAGTTCACACAGACGTCCCTCGCCCGCCTTCACTTGCTGAGGAAACGGATCATTGAGTTCATTAACTGCCTCCTCGAAGTTATCGCTGTGCGTCGGGCCGAGCGATTACTGCGGGGAGTGGCGGTGATCAGTGGGTGACAAGAGCCGGACAGTCAGACCAGGCGActtcagctggaatgaaaaaagAACAACTACAATACAAATCCACAGGGAAATGGAGGCCCATGGCTCAGAAAGGCTCGTGtccaggaagaggaggaaggagggatCGAATGGAGAGGCGGAGGACGGGGAGCGGCCTGTTAAGCTCCAGCGCTGCACTGTGgGCTTGACACATCCTGCACCCTTTGCAGATGAGCTGGAAGCACCGAAGTCACCCTACCAGCGGGTAACTATGGAGGAGGCAAAGAAAGGGACCCCATTGAACCGGCCTGTGCGCGTCTATGCTGATGGGATTTTTGACCTGTTCCACTCGGGCCATGCACGTGCTCTGATGCAGGCCAAGGGACTGTTCCCCAACACACACCTCATCGTGGGCGTGTGCAGTGATGATCTCACACACAAGTTCAAGGGCTTCACAGTGATGAACGAGGACGAGCGCTACGACGCTGTCAGTCACTGTCGCTATGTCGACGAGGTTGTCCGCAACGCGCCCTGGACCCTCACGCCGGAGTTTCTTGGCAAGCACCGGATTGACTTTGTTGCCCATGATGACATCCCATACTCCTCTGCAGGTAGCGATGATGTCTACAAACACATCAAAGACGCAGGCATGTTTGCACCGACGCAGCGGACTGAGGGCATCTCCACATCAGACATCATCACGCGTATTGTCCGTGACTATGACCTGTACGCCCGCCGCAACCTACAGAGGGGCTACACCGCCAAAGAGCTCAACGTCAGCTTCATCAATGAGAAGAAATACCACTTGCAGGAGCGAGTGGACAAGGTGAAGAGGAAGGTGCGCGATGTTGAGGAGCGCTCGAAGGAGTTTGTGCAGAAGGTGGAGGAGAAGAGCATCGACCTCATTCAGAAGTGGGAGGAGAAATCCCGGGAGTTCATCGGGAACTTCCTGCAGATGTTTGGGCCTGAGGGGGCGCTGAAACACATGTTGAAGGAAGGCAAGGGGAGGATGCTGCAGGCCATCAGCCCCAGACAGAGTCCCAACAGCAGCCCAACCCGCGAGCGCTCGCCCTCCCCCACCTTCCGCCTGCCCTTTTTCACCAAGACCTCGCCTCCCTCCTCTCCGCACCCCAGCGCCGCCCGTGGATACCCAATCAGCGAGGACGAGGAAGAAGAGGACTAATTCCCGGCTCCCGTGCTCCTGCTATCCGTGAGGTATCTTCTGGGAAACGGACTTTCCCATTCATCCCACCGATCAACCTTCCTCTTTCAAAGTGAGGTCTTCAACAGGAGTCATCTGTCTCACAGTcaattttttctatttatttcctttttaatgtagCTGGTAGGAATCTTAAAGGAGCCAGATGGTaggaaaatattgtaaaaatggtGCCCTCTTTGTGGTACAGGTTAGGGGTAACCCTGCTACCAGTGACCGGAGTCCTGGCTTCTGTCTTAGTTTTCTCTGAGTTTGTCGGGAGTGTTCCTCGCAGTGCAAGAATGCCTCCTCCTGTGGCTCTTTCAGAATGGCTGGTCTGTCCATCTCACAGCCAGCAGTGGAATCACAGCCTCCAAACCATCCTCTTCAGTGTGGAAGTGCTGGCTTGCCAGGAGCTACtttcataattatttgtttcagttCCTGCAGATATAAACGCACATGCGTGCGTGCACACACAGTGCAGGTGTACATTTATTAGTTGTTAAACTTAACATGGTTATTTTCACATCCATGAAAACCAGCAACCAAAGATACCCATAATATCAGGAGTGTCCACCTAAGAGGGTTCACCCACCCCAACGACCTGTAAAGCCTGGCTTCCTGTCTTGGCAATAGGGATactaattaaactgttttggaCTTCTGCATTGTGACCTGTCATATACAAGGTCTTATCTTTGCAAGTAGTTGAACACTAAAGTTGTGAACTATAGGAATTGCAGTACATCATCCCTATACCCTGCACTCAGGACTTGGTCAGCCCCACACTGAAAATCAGACCATTTCCATCTCAGTCCACTAGAGGGAGATTGAGAGTGAGATTAAGTACTTTATCAGACTGTCACAGGGGCAGACGCCACTATGTGGAGTTTTTCAACTGAATGTCATGGCAGTGTCAGCTGCCACTCTGTgctctgatatttatttttgtgcagagGCATATTATTAGAGTAGACAGACAGTACAGTATTAACTAagaagggaatggttttgcaggaaTTATATGAAGCTGGAGAGAGAACTCTAGTAGAGCTTTCCTGGTACTCATTCCTGTAAGAATCCAGAGGGGAGGTTCTTTAAAGTCTTTGCACTCATTGCGTCCCTCAGATGCCCGTTCTAACCACGCCACACTGTGACGACGCAAACCCCAGCTGACTGCACTCTTACTCAGACATTTCCTGGGTGTGCTATGTAAAcccacctgtttttttttcaatgcacttcatttcagtgtttttaagtgtttgcCTGCCAGTTTATCTTTAGCTGCAAAACTTTAGCCACACACTTGTCATCctgagtgagagacagagctGGGAAACTAGGGGGGTCAGTCTGGACAGCCCAGTGTCTATTATACTTCCTCAGTATCCTGCTCTGAAGCTGCTGAATGAAGATACACCTGCTAAACTCCCACACAATCAATAGattattgttcttattaatttatttttcatcattgtCATGAAAGGACACCTAAAAAAATCACTGTCCTTAaaccactattattattgtattattgatgtATTATGTGAAGAAAACTagatccccctctctctctctctctttttgaaTTCTGAAAACCAGACCACCTGTCGAAGAACCTTATCTTCCTCCTCACTGAACTCCCACTCACCTCTGATTGATTGCTTGGGTGTTGAAGGCCCACAGAAAGCAGAGTTTGTCACAGTTtttatggggggaaaaaagttagctttgtctccttttctttcttttaatgctGTATAGATGAAAACAGTCAAAAACAAAGCCATAATTTATGTTCTGTTCTCTTGCTCATTTTGCTCTAGAATGGACTGGGGTTTTAATtgtttcgtttttatttttcgtCTTCACTCATGTATGTTGTGAGTGACCTGACATGGTGTACCTGAATTCAGTCCTTTGTATTTGGATATTCTGGTACCTCGGCCTGCCTTTGTTGAACACTGGGAGACCTGACTCCGCCATAGCAAGTGCTTAAACTAGATTGGGCAAACAACCACAGAGCTTAGACACAGGGCTGCTTCTGTCCTGGAACCCGCCTAGCATAGCCCCATGCCGCTCATCGTGCTTTAAGCGGAGATTCAAGAGCAACCAAGAGTGGTCATGGCCTCCTACTGCAAACATCGTGCTAGCACATACAATATATCTTTGTTCCTCCTATGGctctgtatacagtgtgtaGGATTTTGCATTCCTATTTATTAAGTTTCCTTATCCCTGTGCCATTGTACTGTGTTCATTCACACTCTCTtccaaactaaaaaaacaaacaaacaaaacatggtgATTCATCTTAACCTTGGATGTAAACATGCactttagaaaatatttttgtggTCCTCTTTATCTACCAGGTGTGAAATccgtacatttatattttttaaaagcattcatgagttaaaaataaaatctgctctcaacgtgtgttttaatgtacagGACACAGAACTGTACCAATCAGCACTTGCCAGTTCTGTGCTTGAGCAGGTTGTCACTGTAAATGTTCTCTACACTCATATTGCAAACCAGCTGTAGCGTGTGCAAAACTCATTATATTTAAAGGTCGAAAACTGAGCGATTTAATTTAATTCGCCTGGTGTATGATTATTCATTAGATAAAAGTGGAGAaccatgtgtttttaaagtgtatatattttgcaaagggagaaaaataataaagaaatgtctGACTTTGCCACAGAGGGGGCTTCAGACATGGGTTAAATAGGTACTGTAAAGGACTGGGAGCCCGTTTGTCAGTGTCCCAGGAGTGGTCAGTGTCAGAGCTTTTGTGTCATAGTTTTGGGGCTGTGCTAGGATGTGTCTGTAGGAAAAAGCCCACTGTCCTCTATCCTGTGTGATTCCCTGATACCATGTTCTGTCTGATTCCCCACTTGCAGCTGTCAATTGATCAAGTCTTGCAGTGTGTAAAGGGTTTATTAGTAATTAACCATCTATGATTAGttaatttcaatataaacaTGACTGTTAAGAATAAAGTTACAGGAAGCGGTTATATATACAGAGTCCAGCGCTCACGCGAAGCTGTTGTGTAGTTGTCCGACCCACACGTAACATTAGATGACTGTCCTGACACAAACCACTCCTGGGTTGACTACAGTGTCGCAGAAATGGACAACTGGAAATACTAAGGAGAAGAAAACGGAAGTGATGTTTTAAACTATAACAGCTGAGAGTGTTTATAGTCTCAGTGCTTCACGGTCCAGGTCACATGATTTGCTTGAAATTCTGTTCACTTCAGTTTTGCTCCCCCCCAGATTTAGGTTTAACAATGGTgcacaacaataaataacaataacacaatagtATCCATAACACCAATAAATATGGATGATTGACACTATGAATCACTGTCCCATCTGGAGAAATTAAGGCAGGTTTTGAGCTGCTCTCTCTTGGTCTCTCTGCTGCAGCTCTCTGAGTGGGACAGAGCCTTGTGATGAATTGTCACCCATCCCCTGTTCTATGCATTATGTATGCAATTTACAGGTATAGAATGTTATCTACTATAGtgtttttatgtacttttttttttgctttagagttattaaattgttaaatgtgtttttaataatgttctGCATCTGCAACTGGTAATGgcataattatttgaatgatcACTTCTTTGAAGTGCTCAGTGGCTGCAGTAATCTGATTGGGCAgatgttttgtcatttaaaaaaaaaaagtgttattattttaatcacattctCCTGAGATGTGTTTCAAAAtcgtgtttattttatttgattttatttcttaacaCTGCTGGGTTGGAAATCAAACCTGTAGCCTAGCATATTTCTATCTGTGTCCAGCATTAGAAGCtgctcaaacaaaacaacattaatttacattttatattacttaACACCACAAATCTTTCTATGCAAATTCACTTCTAATGTATGAACAAGCATGAAATAGCCAGCACCTAGTGTTGGTGTATACATTCAAGCTTGCAACCTGTGGTTcaaagtgctgtgctgtggaagTCATGTTTCCCTCACTGCCTTATAATTGCAGTGCTCTGTGGAGCAGGGATGTTTGTCTATGTatctgtgtttgcatgtgtctATGGttgcctgtgtctgtgtatagGTCAGAGTATGTTGGTGTGCGTAGGCTGCTTTCTCTGTGTTATAGCGGCTTGGACGGCTGGACTGGCTTATCCGTTTCtaggattacatttttattttatttttttggtttgtttgcccATTCTGttgaatcacacacacagtataatgTTTCAGGAACTGGTGAattaaagaaaatctaaataaaatttaaaaa

Function

symbol description
pcyt1a Enables choline-phosphate cytidylyltransferase activity and identical protein binding activity. Involved in CDP-choline pathway. Located in endoplasmic reticulum and nucleus. Implicated in spondylometaphyseal dysplasia with cone-rod dystrophy.

NR:

description
PREDICTED: choline-phosphate cytidylyltransferase A

GO: NA

KEGG:

id description
K00968 PCYT1; choline-phosphate cytidylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009173 True 5725 mRNA 0.44 9 27757223 27768167

Neighbor

gene id symbol gene type direction distance location
AMCG00009169 NA coding upstream 23413 27732555 ~ 27733810 (+)
AMCG00009170 NA coding upstream 60559 27687885 ~ 27696664 (+)
AMCG00009163 rubcn,LOC105896451 coding upstream 86218 27660635 ~ 27671005 (+)
AMCG00009162 NA coding upstream 262698 27493401 ~ 27494525 (+)
AMCG00009152 ecel1,LOC106613064,LOC102301938,LOC107684524 coding upstream 279565 27461230 ~ 27477658 (+)
AMCG00009175 NA coding downstream 74366 27842533 ~ 27860126 (+)
AMCG00009176 ephb3,LOC106613452 coding downstream 333523 28101690 ~ 28122032 (+)
AMCG00009177 NA coding downstream 617439 28385606 ~ 28387362 (+)
AMCG00009181 LOC101468118,LOC100701835,LOC102794991 coding downstream 635956 28404123 ~ 28405444 (+)
AMCG00009180 NA coding downstream 684583 28452750 ~ 28460154 (+)
G54997 NA non-coding upstream 229729 27526067 ~ 27527494 (+)
G54969 NA non-coding upstream 334548 27420529 ~ 27422675 (+)
G54951 NA non-coding upstream 434428 27322540 ~ 27322795 (+)
G54950 LOC106613058 non-coding upstream 435033 27321949 ~ 27322190 (+)
G54949 NA non-coding upstream 437252 27319768 ~ 27319971 (+)
G55184 NA non-coding downstream 557192 28325359 ~ 28325659 (+)
G55202 NA non-coding downstream 611348 28379515 ~ 28380370 (+)
G55203 NA non-coding downstream 612225 28380392 ~ 28380755 (+)
G55204 NA non-coding downstream 612813 28380980 ~ 28381299 (+)
G55205 NA non-coding downstream 614833 28383000 ~ 28383503 (+)
AMCG00009164 NA other upstream 131212 27613583 ~ 27626011 (+)
AMCG00009129 NA other upstream 960455 26793537 ~ 26796768 (+)
AMCG00009108 NA other upstream 2169608 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 2263650 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 2839360 24898116 ~ 24917863 (+)
AMCG00009204 NA other downstream 998287 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 1160725 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 1335441 29103608 ~ 29108227 (+)
AMCG00009220 lsm2,LSM2,smx5 other downstream 1403156 29171323 ~ 29174731 (+)
G55573 NA other downstream 2139744 29907911 ~ 29911564 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015237 pcyt1aa coding NC_007113.7 CM002886.2 9755422 ~ 9779959 (+)
grasscarp (Ctenopharyngodon idella) CI01000004_01946043_01954044 PCYT1A, PCYT1AA coding CI01000004 null 1945784 ~ 1956769 (-)