AMCG00009170


Basic Information

Item Value
gene id AMCG00009170
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27687885 ~ 27696664 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009170
gcTATGAAAACGCGTGGAGCGTCTGAGggaaagattaaaacaaagacaacaaagcAATAAAACCGTAAGATATCGAGCATAAAGACAGCGAGCGAAGGGAGGACAGTGGATGCTGCGCTTAAGCAGGCTGCCCTTGTACCAGTCTAGTGGAAGAGTTCTGGGTCGCAGCACGTGGCTCTTGGCTAATTGGACAGACAGCCCCCAAAcctcctcttctctccagcTGCTGCAGGGTGAGCACACGTTATCAATCAAGCCTTCAGAGAGCGCCGAAATGAAGCCAAAATCCAGTAGCAACAGCAGGGTTGAGGGCAAGGCGGCCGTCAAACGAAAACTGGAGAAGCAGGCCAAGGCAACGGCAGGTGCGAAGAGACTGAAGACAGAGACGGGGGCGCAGGCTGCGAGGAGCAGGACGGAGCGGGCGGCCGGCTGGTTGGCTGAGGCCGTGGTGCGGTCTCGGAGCCAGGCTGAGCGCTCTGTGGAGGGATTCCAGTTTAACGAGAAGAGGGTGCGTGTGCTGTCCGGGACTAGTGCTGTGAAGGCGGGCTCGGAGGGCGTGATATACTGGATGTCTCGAGACCAGAGGGTACAAGATAACTGGGCTCTTCTGTATGCCCAGCAGCTGGCCTTGGCAGAGCGGCTGCCCCTGCACGTGTGTTTCTGCCTGGTGCCACGCTTCCTGGATGCCACCATCCGGCAGTTTGACTTCCTGCTGAGAGGCCTGGAGGAGGTTGCCAAGgAGTGCAGTGCCCTAGGGCTGGAGTTCCACCTGTTGCAGGGCTGTGCAGGAGAGCGTCTTCCCCGCTTTGTTCAGGAATTGGGGGTGGGTGCCGTGGTGACTGACTTCTCCCCGCTCCGAGTGCCCCTACAGTGGGTGGAGGAGGTCAAGAAAGCGCTGCCACGGGACATCCCCCTCATACAGGTGGATGCCCACAATGTAGTGCCCTGCTGGGTGGCATCAAATAAGCAGGAGTATTCCGCTAAGACCATTCGCAACAAAATCAACAGCAAGCTTCCAGAGTTCCTGAAGGAGTTCCCTCTGATGGCCAAGCACCCGCACTGCGCCTCCAAGCCTGCCGAACCTGTGGACTGGGAGCGGGCTCGGTCCAGTCTTGAAGTGGACCAGAGTGTGAAGGCGGTGTCCTGGGCTCGTCCCGGGTCAGTGGCTGGCCTCGCGGTTCTGGAGTCTTTTATCGACCAGCGGCTGCAGTACTTCGACTCCCTCCGCAACAACCCCAACTCCGACGCCCTGAGCAACCTGTCGCCATGGCTGCACTTCGGCCATGTGTCGGCCCAGCGTGTGGTCCTGGAGGTGGAGCGCAGTGGGCAGCGTTGGCCATCATCCGTGAAGGCGTTTGTGGAGGAGACCGTGGTGCGACGAGAGCTGGCTGACAACTTCTGCTTCTACAACAAGAACTACGACTGCGTTGAggGTGCCTATGAGTGGGCTCAGAAGACTCTTAGAGACCATGCTGAAGACCCCCGGCCTTACCTGTACACCCGTGATGAGCTGGAGGCAGCCAAGACTCATGACAAACTCTGGAATGCAGCTCAGTTCCAGATGGTGTCAGAGGGCAAGATGCATGGGTTCCTGCGGATGTACTGGGCCAAGAAGATCCTGGAGTGGACGAGTTCACCGCACGAGGCCCTGGCTATTGCCATCTACCTCAATGACCGCTATGAACTGGACGGCCGGTTCTGGAGGAGTTCAGAGCCTCATACAGCGGGTAATGCTGGGGAGGGTGGCAGCAATGTGCTGGGTATCCTGAATGTGCTGGTGGAGAGGCCGATCTTTGGGAAGGTGCGCTACATGAACTACGCCGGCTGCACCCGCAAGTTCAAAGTGCAACAGTTTGAAACCAAGTACAAACCCAGAACATGTGACCCTTAA

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0044238 primary metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0003913 DNA photolyase activity molecular_function

KEGG:

id description
K01669 phrB; deoxyribodipyrimidine photo-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009170 True 1891 mRNA 0.58 11 27687885 27696664

Neighbor

gene id symbol gene type direction distance location
AMCG00009163 rubcn,LOC105896451 coding upstream 16880 27660635 ~ 27671005 (+)
AMCG00009162 NA coding upstream 193360 27493401 ~ 27494525 (+)
AMCG00009152 ecel1,LOC106613064,LOC102301938,LOC107684524 coding upstream 210227 27461230 ~ 27477658 (+)
AMCG00009153 NA coding upstream 271437 27403288 ~ 27416448 (+)
AMCG00009154 LOC107729591 coding upstream 298583 27384768 ~ 27389302 (+)
AMCG00009169 NA coding downstream 35891 27732555 ~ 27733810 (+)
AMCG00009173 pcyt1a,LOC103040438 coding downstream 60559 27757223 ~ 27768167 (+)
AMCG00009175 NA coding downstream 145869 27842533 ~ 27860126 (+)
AMCG00009176 ephb3,LOC106613452 coding downstream 405026 28101690 ~ 28122032 (+)
AMCG00009177 NA coding downstream 688942 28385606 ~ 28387362 (+)
G54997 NA non-coding upstream 160391 27526067 ~ 27527494 (+)
G54969 NA non-coding upstream 265210 27420529 ~ 27422675 (+)
G54951 NA non-coding upstream 365090 27322540 ~ 27322795 (+)
G54950 LOC106613058 non-coding upstream 365695 27321949 ~ 27322190 (+)
G54949 NA non-coding upstream 367914 27319768 ~ 27319971 (+)
G55184 NA non-coding downstream 628695 28325359 ~ 28325659 (+)
G55202 NA non-coding downstream 682851 28379515 ~ 28380370 (+)
G55203 NA non-coding downstream 683728 28380392 ~ 28380755 (+)
G55204 NA non-coding downstream 684316 28380980 ~ 28381299 (+)
G55205 NA non-coding downstream 686336 28383000 ~ 28383503 (+)
AMCG00009164 NA other upstream 61874 27613583 ~ 27626011 (+)
AMCG00009129 NA other upstream 891117 26793537 ~ 26796768 (+)
AMCG00009108 NA other upstream 2100270 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 2194312 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 2770022 24898116 ~ 24917863 (+)
AMCG00009204 NA other downstream 1069790 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 1232228 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 1406944 29103608 ~ 29108227 (+)
AMCG00009220 lsm2,LSM2,smx5 other downstream 1474659 29171323 ~ 29174731 (+)
G55573 NA other downstream 2211247 29907911 ~ 29911564 (+)

Expression


Co-expression Network