RNA id: AMCG00009175


Basic Information

Item Value
RNA id AMCG00009175
length 2409
RNA type mRNA
GC content 0.54
exon number 12
gene id AMCG00009175
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27842533 ~ 27860126 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCTCAGAGGTTTCCGAGCCCTATCTGAGGGGCACGGTCTGGGCGGCGTGTAGACAGGCTCCGCCCCCTGCACAGCTGGAATGCGCGCGGATATATCCCACAACTCTGCACAGCTGGAATGCGCGCGGATATATCCCACAACTCTTCGCGCAAGACGAGACGGAACTTCCAGCCTCCAGTGGCGAGGAATGTGATCCGCGTCTGTGGTTTAATTGCACAGCCTGTCAAGCCAGCCGCACTGCATTGGTTGAACAGAACATGTGTTCATGGTCTTTAGCCCTAGGCAACATGTCCACAGAAGTTATCAAGCCCTGTCTGAGCGAAACGCAGGCCTCTGAGTTGGTGGGGCGTGTGTTTGGGTTGCATGTAGACAGGATCCACCCCCTGCCCAGCTATGACGATCAGAACTTCCACGTGGTGGTGAGCGGGGGTGGGGAGTACGTGCTGAAGATCATGAACTCCATGGACAGCCGTGACCCCGAGATGCTGGACGTACAGACCCATGCCATGATGTTTCTGAGGGAGAAAGGTCTTCCCACGCCCACTGTGCTCCCCACACTCCAGGGGGAGACCATGAGCCTCCAGGCCATCGATTGTGGCTCAGACTGTAAGCAGTATATTGTGCGGTTATTGACCTATATACCAGGAACACCTCTTGCCAAAATTCCCACCTCATCGCAGAGTCTGTTTGAAATGGAGCACCATCACCTCCAGAGACTGAACCGGGAGAACTTTATCTGGAGCCTGTCCAACGTCCACCTGCTGGAGCGCTATCTTACTGCAATGGACGGAGACCCCAGCCAGCAGGTTGTGAGAAACATTATCGAACTGTACAAGAGTCAAGTCCAGCCCAGACTGGGCTACTTCCGAAAGTGTATAAACCACGGGGATTTCAATGACCACAATATTCTGATTGAGCCAGAGAAGCCAGCTGAGGGCATCAACAGTAATGGTTTTGGGGAATGGcaacagcaggagcagcagcagaaacGCTACAGAATCTGTGGCGTCCTGGACTTTGGGGACATGTATTATGGCTATTACGTGTTTGAAGTGGCCACTACCCTTATGTACATGATGATTGAGAGCAAGCAGCCCCTGGAGGTGGGGGGTCCTGTGCTGGCAGGCTACGAGAGCGTGATCCCTTTGACCGCGGAGGAGCGGGATGTGCTGTACCTCCTGGTGCTGTGCCGCTTCTGCCAGTCACTGGTAATGGCGCGGCACACCGTGCTGCTGCATCCGGAAAATGAGGAGTACCTAATGATCACGGCACGCACTGGCAAAGGCCACCTACTGCGCCTCTGGAAAATGGGCAAGGAGGCACCCTGTCTGAATGAAACGCAGGCCTCTGAGGTGGTGGGGCGTGTGTTTGGGTTGCATGTAGACAGGATCCACCCCCTGCCCAGCTATGATGATCAGAACTTCCACGTGGTGGTGAGCGGGGGCGAGGAGTACGTGCTGAAGATCATGGACTCCTTGGACAGCCGTGACCCCGAGATGCTGGACGTGCAGACCCATGCAATGATGTTTCTGAGGGGAAAGGGGGAGGTCATGAGCCTCCAGGCCATCGAGTGTGGCTCAGACCGTAAGCAGTATATTGTTTGGTTATTTACCTATTTACCAGGAACACCTGTTGCCAAAATTCCCACCTCATTGCAGATTCGGTTTGAACTCGGGAGAATGGCAGCTACTGTTGACAAGATGGAGCACCCTCACCTCCAGAGACTGAACTGGGACAACTTTATCTGGAGCCTGTCCCATGTCCACCTACTGGAGCGCTATCTTACTGCAATGGACGGAGACCCCTGCCAGCCGGTGATGAGAAACATTATTGAACTGTACAAAAGTCAGGTCCAGCCCAGACTAGGCTCCTTCCGAAAAATTTCAGCTTTATTTAAATGGATACTTGGACAGGTCATAACAACAAAGCCTGTCTTCTCGGCAGGTATAAACCATAAGCCAGCTGAGGGCATCAACAGTAATGGTTTTGGGGAATGGcaacagcaggagcagcagcagaaacGCTACAGAATCTGTGGCGTCCTGGACTTTGGGGACATGTATTGTGGCTATTACATGTTTGAAGTGGCCACTAACCTTATGTACATGATGATCGAGAGCAAGCAGCTCCTGGAGGTGGGGGGTCCTGTGCTGGCAGGCTACGAGAGCGTGATCCCTTTGACTGCGGAGGAGCGGGATGTGCTGTACCTCCTGGTGCTGTGCCGCTTCTGCCAGTCACTGGTGTTGCCATGGCACACAGTTCTGCTGCATCCGGAGGATGAGGAGTACCTAATGATCACGGCACGCACTGGCAAAGGCCACCTACTGCGCCTCTGGAACATGGGCAAGGAGGCAGTGGAGCAGCTGTGGTTGGTTTTAGGTTTTACAATCTGTAAGaatacataa

Function

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG:

id description
K18201 AGPHD1; hydroxylysine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68786 lncRNA upstream 216522 27623516 ~ 27626011 (+) True AMCG00009164
TU68713 lncRNA upstream 315039 27526067 ~ 27527494 (+) True G54997
TU68684 lncRNA upstream 419858 27420529 ~ 27422675 (+) True G54969
TU68664 lncRNA upstream 519738 27322540 ~ 27322795 (+) True G54951
TU68663 lncRNA upstream 520343 27321949 ~ 27322190 (+) True G54950
TU68950 lncRNA downstream 465233 28325359 ~ 28325659 (+) True G55184
TU68975 lncRNA downstream 519389 28379515 ~ 28380370 (+) True G55202
TU68976 lncRNA downstream 520266 28380392 ~ 28380755 (+) True G55203
TU68977 lncRNA downstream 520854 28380980 ~ 28381299 (+) True G55204
TU68978 lncRNA downstream 522874 28383000 ~ 28383503 (+) True G55205
AMCG00009173 mRNA upstream 74366 27757223 ~ 27768167 (+) True AMCG00009173
AMCG00009169 mRNA upstream 108723 27732555 ~ 27733810 (+) True AMCG00009169
AMCG00009170 mRNA upstream 145869 27687885 ~ 27696664 (+) True AMCG00009170
AMCG00009163 mRNA upstream 171528 27660635 ~ 27671005 (+) True AMCG00009163
AMCG00009164 mRNA upstream 218101 27614255 ~ 27624432 (+) False AMCG00009164
AMCG00009176 mRNA downstream 241564 28101690 ~ 28122032 (+) True AMCG00009176
AMCG00009177 mRNA downstream 525480 28385606 ~ 28387362 (+) True AMCG00009177
AMCG00009181 mRNA downstream 543997 28404123 ~ 28405444 (+) True AMCG00009181
AMCG00009180 mRNA downstream 592624 28452750 ~ 28460154 (+) True AMCG00009180
AMCG00009188 mRNA downstream 628930 28489056 ~ 28505796 (+) True AMCG00009188
TU68775 other upstream 225155 27613583 ~ 27617378 (+) False AMCG00009164
TU68288 other upstream 2254923 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 2924670 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 3025999 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 3866627 23883317 ~ 23975906 (+) True G54263
TU69158 other downstream 906328 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 1068766 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 1243514 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 1243514 29103640 ~ 29106908 (+) False AMCG00009208
TU69299 other downstream 1313013 29173139 ~ 29174700 (+) True AMCG00009220

Expression Profile