RNA id: TU68049


Basic Information

Item Value
RNA id TU68049
length 1365
RNA type TUCP
GC content 0.41
exon number 5
gene id AMCG00009085
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24812618 ~ 24816534 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgAATAATTGACAACTTATTGGTCATCTTGAATACAAACCCATGAGAGTCAATCAGTGATGTGATGGACAATTACTTAACAAAGTAAGCATGAATACCCTttcaactaaattaaataattgtattaaactcATGTGAACTAACTTTAAACGAATGCTTGTAAactaatgtttgttttcatttcggctatgaatggggggggggaaataatattGAGTGTAGAGACTACAGCACCCAGCATCCTTTGCGCATTTAAACCACGGATTTTGCTTATCGGATCACCTTTGGTCAGCTGAATTGTAGATCGACTGCGCAGTTTATCCAAATTACCCTAACATAGTAACCTACTTATTGTTCCGTATGACCGCATTAAGCCtgggaaaactggaaaaacaacagcgcttatttattacaaaagctGGAGTAGCATTAAAGTTAGCCGCGGTATGGCAGGTGGatagtttcagtgttttaaagctTAAGCATTGCTTCTCCCTAATTTGATCCACACAGGTTCCAGGTAACTATTATATGTGCGTGAGTTTTCTCTCCCCGACACATCATGTCGCACTCCAGGGCTGTGAAGCAGACGAGGACTGCGGATGATCCGAAACCGCAGACGGGTCCCAGAAACAGAGCATTTGCCAGTACGAGAGGTAACCATAGCAACGTGCGAGCTGGAAGTTCCATTTGCGGGAGCGGGAGAAACGCAAAGACAAGCGCAAAGACCGCTCACGCCAACGCCAAAGCAAAACCAGAAGGGGCAACGACAAgtcaaaaaaaagaacaacgtgtccagaaaactgaaaatgggTCAACAACTCAAAGTTACGCAGCTTTTACAGTCATCCCTCCCAACCCAAAGAAGAGGAATGAGCTAAAGAaaaAAGCAGAAGCCGAACTGGCAGCACTGGAGGACTTCAGACGGAGGCAGTTAGTGGGCCATGTATCCATTGTCCCTAGCACTGGGGGATTTTAACACTGGAGGAAGTAAGGAGAAGACAGCAAGAAGAGttgaacacaacacaaaaaagaaagcaggtgAGAAGAAGTATACCTTGAATTCTACCAGTCACTGGGTGCTGAATGATACATTTCAGGTGTGATTTGATTGTAAATTAAGGGCTGAATGTGCAACAGCGTTCATTTctattatattgtattcatcATATTCTTCACAGAAGGGACTACATAATTAATCTTAACCCTTTAATTGAAGTTTCTATACTGGAGTATTTGTGTTGCATGTTGTACAAATTcaagttaattaataaacataaacataagtCAGTTTTAATATACAGGTATACTGTTTTTTAAGTCTGAAGTGTTACTGCACTTTTCTGTACccctcacaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68038 lncRNA upstream 25533 24783510 ~ 24787085 (+) True G54430
TU67939 lncRNA upstream 534057 24277905 ~ 24278561 (+) True G54356
TU67901 lncRNA upstream 646557 24165790 ~ 24166061 (+) True G54328
TU67815 lncRNA upstream 918331 23890127 ~ 23894287 (+) True G54264
TU67787 lncRNA upstream 1147966 23664157 ~ 23664652 (+) True G54238
TU68188 lncRNA downstream 355467 25172001 ~ 25172864 (+) True G54547
TU68209 lncRNA downstream 491726 25308260 ~ 25308495 (+) True G54563
TU68212 lncRNA downstream 530744 25347278 ~ 25348983 (+) True G54566
TU68232 lncRNA downstream 588136 25404670 ~ 25413822 (+) True G54580
TU68253 lncRNA downstream 673340 25489874 ~ 25493573 (+) True AMCG00009104
AMCG00009081 mRNA upstream 31867 24762016 ~ 24780751 (+) True AMCG00009081
AMCG00009080 mRNA upstream 146390 24664303 ~ 24666228 (+) True AMCG00009080
AMCG00009077 mRNA upstream 158333 24649714 ~ 24654285 (+) True AMCG00009077
AMCG00009078 mRNA upstream 165138 24634390 ~ 24647480 (+) True AMCG00009078
AMCG00009076 mRNA upstream 180986 24566439 ~ 24631632 (+) True AMCG00009076
AMCG00009084 mRNA downstream 1684 24818218 ~ 24844217 (+) True AMCG00009084
AMCG00009087 mRNA downstream 41479 24858013 ~ 24859230 (+) True AMCG00009087
AMCG00009083 mRNA downstream 57039 24873573 ~ 24881942 (+) True AMCG00009083
AMCG00009088 mRNA downstream 81582 24898116 ~ 24917710 (+) True AMCG00009088
AMCG00009089 mRNA downstream 134241 24950775 ~ 24958636 (+) True AMCG00009089
TU67814 other upstream 836712 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 3518717 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 3537264 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 3644043 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 6258658 18550772 ~ 18553960 (+) True G53520
TU68059 other downstream 98495 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 768358 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 2797049 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 3949920 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 4112358 28928892 ~ 29011768 (+) True AMCG00009207

Expression Profile