RNA id: AMCG00009076


Basic Information

Item Value
RNA id AMCG00009076
length 8085
RNA type mRNA
GC content 0.45
exon number 32
gene id AMCG00009076
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24566439 ~ 24631632 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTCGTCATGTCAAGACCGGCCAGCTTGCTGCCATCAAGGTCATGGATGTCACAGGGgatgaagaggaggagatCAAACAAGAAATTAACATGCTTAAGAAATACTCACACCATCGGAACATCGCCACCTACTACGGtgcattcattaaaaagaaTCCTCCAGGAATTGATGACCAGCTCTGGCTGGTGATGGAATTCTGTGGGGCCGGTTCTGTAACAGACCTCATTAAGAACACGAAGGGAAACTCTCTGAAGGAAGAATGGACTGCCTACATCTGTCGAGAGATCCTGAGGGGGCTGACTCACCTCCACCAGCACAAAGTGATCCACCGAGACATCAAGGGCCAGAACGTTCTTCTGACTGAGAACGCGGAGGTGAAACTAGTTGATTTTGGTGTCAGTGCACAGTTGGACAGAACTGTTGGTCGGAGAAACACCTTCATAGGAACGCCATACTGGATGGCCCCTGAAGTAATTGCCTGTGATGAGAATCCTGATGCCACCTATGATTTTAagAGTGACCTGTGGTCGTTGGGAATCACAGCCATAGAGATGGCAGAAGGAGCTCCACCTTTGTGTGACATGCATCCAATGAGAGCCTTATTCCTTATTCCAAGAAACCCAGCCCCAAGACTAAAATCTAAGAAGTGGTCTAAGAAGTTTCAGTCATTCATCGAGAGCTGTTTGGTAAAGAACCATGGTCAACGCCCCAGCACAGAGCAACTGCTCAAACATCCCTTCATCAGAGACCAGACCAATGAGAGACAGGTGCGCATCCAGCTGAAGGATCACATCGACCGGACCAAGAAGAAACGGGGAGAGAAAGATGAGACAGAGTATGAATACAGTGGgagtgaagaggaggaggaggagaatgaAATGGGAGAGCCCAGctccctcaTCAACATCCCCGGGGAGTCCACACTGAGGAGGGACTTCCTGCGCCTTCAGCTGGCCAATAAGGAGCGCTCGGAGGCTCTGCGCAGAcagcagctggagcagcagcagaacGAGGAGCACAAGCGCCAACTGCTGGCCGAGAGGCAGAAGCGCATAGAGGAGCAGAAGGAGCAGAGGCGGAGATTGGAGGAGCAACAACGGCGGGAGCGGGAGATACGCAAACAGCAGGAGCGAGAGCAAAGGCGGAGGTATGAAGAGATGGAACAGATACGGCgtgaggaggagaggaggcaggCTGAGAGAGAGCAGGAGTATATCAGGCGTCAGTTGGAGGAGGAGCAGAGGCAATTAGAGAtcctgcagcagcagctacTGCAGGAGCAAGCTCTTCTTCTGGTAAAGGAGCAGGCTGGTTGGCCTTTCTCAAGCTCCACTGTGTCTGCTCTCGACCCGGCTGTCTCGTGCCgtgctgttctgttctgtgccGAATACAAGCGCAAGCAGCTGGAGGAGCAGAGACAGGCCGAGCGCTTACAGAGGCAGCTCCAGCAGGAAAGGGCCTATTTGGTctccctgcagcagcagcagcaacagcagcaacaacagcagcagcaagacCCCAGACCTGGAGATAAAAAACAACTCTACCACTACAAAGACTCTGTGAACCCCGTTGACAAACCAGCCTGGGCTAAAGAGGTTGTGCAGCGGTCCAAAAGTCACTCCCCCCATCTCCCATCCAAGCAGTGTCAAGGCTCAAACAATCCAGCCAAGGCGCACATTTCACACCCAGCTTCTCATAGACCTCCACCCCATCCTTCTAACCCACCTTCCTTCGGCAGATCTGAGGCCAATAAGCAGCAGTCCCTGGACGTCCCCATAATTCAAATCTCGGGTACAGAAATGGATCAGGACAGACACAGTCTCGCCAATTTCATTGACGCTCATGTCAAAGAGCTGAAAGCCCAGAGGGCTGGTGCGAAGCCCAGAGGAAGGAGTCCCACCAACTCTAACAACCTGGTGGAAGAACGCTCCAAGTTGAACAGGCAGAGCTCTCCAGGGATGCAGCACAAAGTGGCCAACAGGATCTCAGACCCCTCTCTGCCCCCACGCTCTGAGTCCTTCAGCAGCAGTGGGATCCAACCCGCCAGGACCCCCCCTATGCACCGGCCGGTAGAGCCCCAGATTGCTCATCTGGTCCCTGTGAAATCCCATGGCTCCGCTATGACAGGCTCTCAGTCTCTGCATGACCAGTCAGCCAAGTCTGCCTTCCAGGAGGGCATCATCTCCCATCGGCCCGAGATGCCTCGACAGAACTCTGACCCCACCTCTGAGACGCCTCCTCTGCCCCCTCGCATCGCCAGCCGAGAGGAAAAGTTTGACCGCAGCTCCTGGCTCAGGCAGGAGGAAGATATTCCACCTAAGGTTCCCCAGAGAACAACATCAATATCTCCAGCACTGGTGAGAAAGAACTCTCCCGGAAATGGAGGGGGCCTGGGGACCAGAACAGGGTCTCAGCTCATCAGAGCCAGTAACCCAGACCTGAGGAAGACGGAGGTTGCCCTGGAGACAGTGCTGCAGAGAACCAGCAGTggcagctcctccagctccagtACCCCCAGCTCACAGGGCGGCTCCCAGCCTGGCTCCCAAGCTGGCTCACAAGCTGGCTCCAGTGAGAGGAATAGAGTACGAGGATCGAACAAGCCTGAAGGCTCCCCTGTAGTGTCTCAGGACCCCTTGAAAGGAAAGTCAGAGGAGGGGCGTGAGGTGACAAGACCAAGCAGACCTGCGAGTTATAAGAAAGCCATAGACGAGGACCTGACAGCCTTGGCCAAAGAGCTGCGAGAGCTGCGTATTGATGAGACAAATCGTCCACCCATCAAAGTGACAGATTACTCTTCCTCCAGTGAGGAGTCTagcagtgaggaggaggaagacgcGGAGAATGAGGCTCACGACGGCACCGTCCCAGTCAGCGACATCCCACGCATAATGCCTTCTGGTGTGCCGGGTAGCAATGAGTCTTACGGCATGGGTATGATGGGAAGCCATGATGATTCCCATGGAGACTCTTATGGTGGTGGCTCCAAGGAAGGGACCTTGATGATGAGAGAGACGTTGGGCGATAGAAAGCACTCTGGCCATGCCGATAGCAATGGCTTTGCAGGCCACATCAATCTGCCTGATCTGGTTCAGCAAAGTCACTCCCCCTCGGGCACACCTACCGAGGCCTTGGGCCGGGTTTCAAGTCTGCATGCTCAAGACCTGGATTCAATTGCAGAATACGGACTCGGGAGTGGTACGAAAGCCTCATTTACTCCCTTTGTGGACCCTCGAGTCTACCAGACATCTCCCACAGATGATGACGATGAGAATTCCGCAGCAGCCCTGTTCGCCAATGAGCTGCTGCGACAGGAACAGGCCAAGCTGAATGAGGCTCGGAAGATCTCGGTGGTGAACGTCAACCCCACCAACATACGGCCACACAGCGACACGCCAGAGATCCGTAAATACAAGAAGCGCTTCAACTCTGAGATCCtgtgtgctgctctgtgggGGGTGAACTTGCTAGTGGGCACAGAGAATGGACTGATGCTACTGGACAGGAGTGGCCAGGGGAAGGTCTACAACCTCATCAATAGGAGGCGCTTCCAACAGATGGACGTGTTAGAGGGGCTCAACGTGCTGGTGACTATATCAGgaaagaaaaataagctgAGGGTGTATTACTTGTCATGGCTGAGGAACAGGATATTGCACAATGACCCGGAAGTAGAAAAGAAGCAAGGCTGGATCACAGTGGGGGAACTGGAGGGTTGTGTTCACTACAAAGTTGTGAAATATGAAAGAATCAAGTTCTTGGTCATTGCTCTGAAGAATTCAGTGGAGATTTATGCCTGGGCTCCGAAACCATACCATAAATTCATGGCATTTAAGTCTTTTACAGATCTACAGCACAAGCCGCAACTTGTAGACTTAACAGTTGAAGAAGGTCAGAGGTTAAAAGTTATCTACGGGTCCAGCGTTGGTTTTCACGTGATTGATGTGGATTCAGGGAATCCCTATGATATCTACATCCCGTCCCATATTCAGAGCAATATCACTCCACATGCCATTGTGATCCTCCCCAAGACAGACGGAATGGAGATGCTTCTGTGTTATGAAGATGAGGGGGTCTATGTGAACACTTACGGCAGAATCACTAAAGACGTGGTGCTACAATGGGGAGAGATGCCCACCTCTGTTGCCTACATCCATTCCAACCAGATCATGGGCTGGGGAGAGAAGGCCATTGAGATCCGCTCCGTGGAGACGGGACACCTCGATGGAGTTTTCATGCACAAGCGAGCTCAGCGATTAAAGTTTCTCTGTGAAAGGAACGATAAGGTGTTCTTTGCCTCAGTTCGATCTGGAGGCAGCAGCCAAGTCTTCTTTATGACCCTCAATAGAAACTCTATGATGAACTGGTAATACGCATTCAGTAGTATCCAAATGGTGGATTTGATCTCCTCGGCATTACAGTTGTAGACTATAAGGTACATTTTCaataagttaaattaataaacaaaagcagacaAGCAAGCAAGCGAacgaacaaacacaaaatgtaataaagaacCTTGGAAAATGTGCATCTGCATCTGAATGGAAGAAACAGCCTTTTTTGACGTGGCAATTCCCTGTTTGTTGTTTCACGATCTTGAAGCCCAGATGGACAGTGGCTAAGAAGGAAAATCTACCGCCCTGCACcacaaggggggaaaaaactaaaaacaaatccttcCAAAGTCAGAAAGAGAATAACAGCTTCTCACTGAGGGGTGTGGACATCAACTGGGTCTTCTGACAAGGCCTTTCAGTCACTTTGGAGTTCATCATCCTAGTTGTGTTTCTTCcccctttgtttttttgtgagtgGACaaggacaaacaaaaacaaagaaggagTTGGCTGAGTATGAGGGCTTATCTTTAGGACTGGGGATAGGGGGGTGAAAGTGGCATCttcctgcctgtctgcctgctgGGGGTTAGTTGTAGCTAATGTAATACAGGTGCTGTACACATAAATGAAAGCACAGCAGTGAAAAAAGAAACTTGTACACTTGATTACTTCTGTGCAAAAAGAATTAACTGTAAAGCTGTCTCACCATGATTTTCGCTTttccttctattttttttcctcctccccccaccccccactcttCAAAATCATGTGCATTAGACAATTGGtcaaaattgttttattgtacttGCAGAGCCTACAATCCACTTGCAGGTGGAACTATAGGGATCTGTGTCAGTATGGAAAGTACTGAAAAGTTGAGAGGAAAGACACTAGCAGTTGGGTGCACTGAACATAAGGGAGGGCCCTGATAAAGGGGATCGGACCCCACCCTATGAAAAAAGGAACTGTCCAACAGGGATTCCAGGGGTTAAAATGTACGTTGTCAAGTTTTACCAGCAATCCTTTTTCAGAGGGATGTAtgcaagtaatttattttggctAAAGCTTTGGCACAAACCACAGGCAGTTTGtaaaagaatagaaaataaataaataagctgaaAGAGAAGCCAAGGACAAGGGCAGGCTTTGTATGCAGAGTATTCTTTCTTTGGTGCCAACTTGGAACAAGTTTGTCCCTTATGAGCTGTTAAACCCTTTCACCACCCTTTCATCAGGATCACCTTCACCACTACACACTTATATTAACAAACATCTTTATTCAGTCATagtaggctttttttttttttagttttgttatttcttgtttgatttacttaatatctaaaCAAGTAGCTAAATAAGCATGGTTGCCCAGTGAGTTTTACGGTGttgcaaaagaagaaaaacaaaaaaaatctgtgttgcGCTTCCTCTTGTCAACCTACCTcgtttattttttggtttcttttagctcttcaggtttttttttgtctctttcgATATAAATGTGATATTGCTTGTCGTTTCTTACATTGCTGAAACCGACTCCATTGAAAGTGCAGAAAGAAGTAGCAACTGGGCATGTTCAGTTTCATTCAGAGCAATGTCACAAACCCATGAATTTTCGCCAAGCTGAGAACACGGGACAATTATAGAGCAGTGGGTGGCACTGATATTTCTTAATGATGGGACAACcactttttatatgtataagccaaaaaagttatatatacttaaaaagAAGGTGCTTGTGTTAAACAAATTGTCATTGATTTGGAAAGCTGAGATTTGTGTAACTGGTACCACAAGCCCAACCCACACTATGAACTCTTATAAGACTGGAAACTGCTGTATCCAAGACAATAAGGGTGAGaattataatcataatcttCTGTGAACTCCCCAGCATTGTTGCTGTAGCCCTGTAATAAGCGGTTTTGTTcatgtaaaacttttttttttttactttaggTTGAACTTTGTTAATTATTGTAGGTATTTGATGCAGTGggcatatatatgtgtttggATGAGGATTTTTTTCATTGCCTGCAATATGAGTGCCGTAATTCTGAACTGAACTACAAAACTCTGTGCACATCATTTTTATAGTTTGGCATAAAACCTAGGTGTACAGTAGTTCTAGGGTAATATTTTactcttattttgtttacaatttattGACACTTTCTGCCAGTACAATTGTACATTACATAGCATGATGAAACCATAGGCAAAGTAGGCTAATAAGACAGCCACTTcgtaattaagtttttttttttttgtttgttttttttgtatttgtattgtttatttttattttttaaatcttaacaCTGTAAAGTATTTCTCTTCTCTGGGGTATGAACTTTACTTAAAACTactgaaaaaagaaattaaaacctAAAAACATTTATCTCCTTTGTatggtattgtattgtttttcttttcggACACAAAAGGTTTGCTGTATATTGCCTGATTAAGAAATCCCTGGAAAGAAAtaccaataattaaaaaaaaaaaaagtttgctgtTCTTTATCAGAAGgaatcattctttaaaaaagggAATAAGAGGATGCATTTGACTTGTGCCTTTCAAATGAGCCAGGAAAGTAGCAACATCCCACACCGGCATTGACGCCTGCTTTCATATAAACCTGAATCAGTTTGTAACATGCCCTATGGATCCTTGGGAGCTGTGCCATTATTAATAGAAACAATTCACCATTGCGTTGTTTACTGTATCAGTAGCCTAAAACTCCTGGAGAAGCATTTCTCCCTTTGTAAGTGGCCCTGTTAGATCAGGAATTCAGTGAGAACATCACTCCCTTGCCATTCAGGGTTGTATATGGTGACTTAATTTCTAAACGCTATAGGtacaaaaagtgtgtgtgtttgtatatacagctctggaaaaaattgagaccacttaacattgatttctgaacttggagtggtctcttatttttttttccagagctgtatgtgtgtgtatgtgtacatatatacacatacatacacataggtatgacttttattttagttttcattttttgatgGGAAtatgtgtgcactgtgtgtgtttgggttttattttcttgaaagtTGACTCCATGCGATTTTTCAGGTGGTCTAAAATTAAATgctagattatttttttcctgttactgttactttaattctcttgtttttggtttattttacattatttcctTTGTGTCTACTTTGTGGAATCCTTGTTCCAGAAAGCAAAATTAATTGCAGAGCTTTGGTGCTGGTTGTAATGGGTCACAAGTATCATTTGcacataataatgatgatttatatttaagaaaagaaTGACTTAATAGCTAAAGTAAATTGTTCTAAGGGGTATAATCTCTGAAACAGGGTTTTAGCAATAAACTGAACTGCtgacttgtgttttgtttttgtgttcttttctttatatCCGtttttgtgaaaacattttaacttgtttattttttttttgtccaacCTGCTGCAGAGATGAAGGGCACATTAAGTTAACTGTCAATTTCCTAGTTTTATCTGGCATTACACAATTGATGCAAGTGATTTTGGCATGGAGTGGAATACGTTAAACGATtgctttatttacagtttgACTTCCCTAGTACTGTCACggtttctgttttcaaatgaaaaagcattagtaatgttcctgtttttaaaaaataaatgaataaattaaattagaaccTGA

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function

KEGG:

id description
K08840 TNIK; TRAF2 and NCK interacting kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67939 lncRNA upstream 287878 24277905 ~ 24278561 (+) True G54356
TU67901 lncRNA upstream 400378 24165790 ~ 24166061 (+) True G54328
TU67815 lncRNA upstream 672152 23890127 ~ 23894287 (+) True G54264
TU67787 lncRNA upstream 901787 23664157 ~ 23664652 (+) True G54238
TU67786 lncRNA upstream 902345 23663393 ~ 23664094 (+) True G54237
TU68038 lncRNA downstream 151878 24783510 ~ 24787085 (+) True G54430
TU68188 lncRNA downstream 540369 25172001 ~ 25172864 (+) True G54547
TU68209 lncRNA downstream 676628 25308260 ~ 25308495 (+) True G54563
TU68212 lncRNA downstream 715646 25347278 ~ 25348983 (+) True G54566
TU68232 lncRNA downstream 773038 25404670 ~ 25413822 (+) True G54580
AMCG00009079 mRNA upstream 67950 24461938 ~ 24498489 (+) True AMCG00009079
AMCG00009072 mRNA upstream 344472 24218804 ~ 24221967 (+) True AMCG00009072
AMCG00009070 mRNA upstream 349592 24212416 ~ 24216847 (+) True AMCG00009070
AMCG00009069 mRNA upstream 359918 24200357 ~ 24206521 (+) True AMCG00009069
AMCG00009066 mRNA upstream 494709 24063842 ~ 24071730 (+) True AMCG00009066
AMCG00009078 mRNA downstream 2758 24634390 ~ 24647480 (+) True AMCG00009078
AMCG00009077 mRNA downstream 18082 24649714 ~ 24654285 (+) True AMCG00009077
AMCG00009080 mRNA downstream 32671 24664303 ~ 24666228 (+) True AMCG00009080
AMCG00009081 mRNA downstream 130384 24762016 ~ 24780751 (+) True AMCG00009081
AMCG00009085 mRNA downstream 181547 24813179 ~ 24816522 (+) False AMCG00009085
TU67814 other upstream 590533 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 3272538 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 3291085 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 3397864 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 6012479 18550772 ~ 18553960 (+) True G53520
TU68049 other downstream 180986 24812618 ~ 24816534 (+) True AMCG00009085
TU68059 other downstream 283397 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 953260 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 2981951 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 4134822 28766454 ~ 28777621 (+) False AMCG00009204

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046495 False 2774 mRNA 0.46 12 NC_007135.7 26493266 ~ 26518972 (-)
grasscarp (Ctenopharyngodon idella) CI01000082_00234503_00271440.mRNA True 4501 mRNA 0.52 34 CI01000082 234436 ~ 271440 (-)