AMCG00009079


Basic Information

Item Value
gene id AMCG00009079
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24461938 ~ 24498489 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009079
GTAGGTGACCCCTGCTCTGCAGGTTGAGTGCTAGGCATGTTGCAGCCACAGAAACTCACCAACAGCACGCTACAACTTGTGGCCAATGACATGAGCCAGATAATGGACAACCTGGACACCAGGGATCTGGACTTTGATCTGGAAGGAGAGGAGGTGGACTTTGATGGTAATGATCCAAGTTACCCAGAAACTTCCAGGATccccttttctgcagtttacGACACCAAAGGATTTAAGGAATCGACGGCAAAGGTGTATCTCACAGCTGTTCCCATTGTAGCTAAAATTCTGGAAGTGGAACGCTTCACCTCAGCACAGGACCGCTTTAACATAACACATCAAAGGAGCGTCTCAAAGGTTCACACGGTTGTTTTCACAATTGAAATAAGACATGGGAATTTTACCTGGCGTGTAAAAAGGAAACAGAAGCACTTTTACGATCTTCACCGCGAGCTCATTCGATACAAGACCCTCATGAGGATCCCACTGCCAACCAGGAGTCACACAGTGAGAAGACAGACCATCAAGAGGAGTGAAGTGAGAGAGATGCCCACTTTACCTCGAGGGAGTGATAACCTGGTCAGAGAGGAACAGGTGTCAAGTAGACGGAAACAACTAGAAGACTACTTGAACAAGTTGTTAAGGACGTCCATGTACAGAAACTACCATGCCACAatGGAGTTTATTGATGTGAGTCAGATGTCCTTCATTCATGATTTGGGACCAAAGGGCTTGGAAGGCATGATACAGAAAAAGTCAGGCGGTCATCGCATCCCAGGAATGAACTGCTGTGGCCACAGTCAAATCTGCTATCGCTGGTCTAAGAGGTGGTTAGTTGTGAAAGACTCGTTCGTGGCATACATGAAACCAGACTCTGGAGCCATTTCGTTTGTTCTGCTGGTTGATAAAGAGTTCAGCATTAAAATGGACACAAAGGACACCGAGACAAAGCACGGACTTCGTATTGACAGCCTATCCAGGACCCTTGTGTTGAAGTGCTCCAGCTTTCGTCATGCTCGATGGTGGGGCCAGGCTATTGATGAGTTTGTGCGTACACATGGGAAGGAATTCCTGAAAGACCACAGATTTGGGTCCTTTGCCAGAGAAGAACACGACATCCCGGCAAAATGGTATGTGAATggaaaaacatacatgcatgaTGTAGCAGATGCTCTGGAGGAAGCTAAAGAAGAAATTTTCATCACAGATTGGTGgTTGAGCCCTGAAATTTTTCTCAAGAGGCCTGTGGTTGAGGGGAGTCACTGGAGACTAGACTGCATACTGAAGCGCAAAGCAcaACAAGGAGTGAAGATCTTTGTGATGTTGTATAAAGAAGTTGAACTGGCTCTGGGAATTAATAGTGGATACAGCAAGAGGACACTAACGCATCTTCATCCCAATATTAAGGTGATGAGACACCCTGATCATGTTTCCTCCACTGTATACCTCTGGGCTCACCATGAGAAGTTGGTTGTCGTTGACCAATCAATAGCCTTCGTCGGAGGAATCGATCTGGCTTACGGCAGGTGGGACGACCGAGAGCACAGGTTAACAGACGTAGGCAGCGTCACACGGCCCATGGCGGTAACCAGTGAGCAAACTTCCAGTGCCGAAGCAGCTCCACTCACTGCATCAGATCCCAATGGCAAGGGACCACACCAGAACAATGGCAGGAGCCCGGCAGCCGTTGACTCTGAGGATGTACCCAAACTGAGTGGAAACCATCGTGCCCGGAAACACGCGCGATTCAGCCTCTACAAGCATCTCCATAAACACGCCATGCGACACAGTGACAGTGTCAGCAGTGTTGACAGCATGGATGAAAAGTTGGGATCAACCAGGAGCCTGCAGACTGAAGTGGGAGAGCTGATTGGGAACACTAGATTCTGGCATGGCAAGGACTACTGCAACTTTGTCTTCAAGGACTGGGTCCAGTTGGACAAGCCGTTTGATGACTTCATCAACCGATATGACACTCCCAGAATGCCCTGGCATGATATTTCCTCAGTGGTTCATGGGAAAGCAGCCAGAGATGTGGCAAGACACTTCATACAGCGCTGGAACTTCACTAAAGTTTTGAGATCTGCGGCAGACTGGTCTGCTGGGATCAAGTACCATGAAGAGTCCATCCACAATGCCTATGTCCACACGATACAGAAAAGCCAGCACTACATCTACATTGAGAACCAGTTTTTCATTAGCTGTGCTGATAACAGATACGTTTTCAACAAGATCGGGGACACCATTGCAGAGAGGATCATCAGGGCTTACAAGGAAAACAAGAAGTACCGTGTATATGTGGTGACTCCGCTGTTGCCTGGATTCGAAGGAGACATCAGCACTGGAGGGGGAAATGCCATCCAAGCCATCATGCACTTCAACTTCAGAACTATGATAAGGGGGGAGAATTCCATCATTTCCCAGGTGAAAAAGGAAATGGGGGACCAGTGGATTAACTACATCTCATTCTGTGGGCTGAGGACTCACGCTGAGCTGGGGGGAAGGCTGGTGACTGAGCTTATCTACATCCACAGCAAGATGCTGATCGCCGACGACAACACTATCATTATCGGCTCGGCAAACATCAATGATCGTAGCATGCTGGGAAAGCGTGACAGTGAGGTGGCAGTTATTATTGAAGATACAGAGACTGTGCCCTCACTGATGGATGGACAGCCATATGAGGCAGGGAAGTTGATTCTGGGGGGCTTTTCGGATCCCACCATCGATGTGACCGATCCGATCAGTGAGCGTTTCTACAAGGATTTGTGGATGGCGACTTCTGCTCGGAACGCAACCATCTATGAAAAGGTTTTCCGTTGCCTGCCCTCCAGCGTTGTTAGGAACAATACTGAGCTGCGGGAATTCCTCCAGAAGCCTGGCATGGGGACAGAAGACCCTGCACGAGCTTATGAGGAGCTGAAGAAGATCCGGGGCTTCCTAGTGCAGTTCCCCCTCGACTTCCTGTCTGAGGAGAATCTTATGCCTTCAGTCGGGACAAAGGAGGCTATGGTCCCCACAGAAACCTGGACTTGATCTGGACCTCGCTCATTGCTAGCAAGTCCTCCACCCCACTGACTAGAACTGCTGCACATAACTGCCAGTCCGGGAATGATGCTAATTCTtacctgtaaaaaataaaaaatatataaatacatttatttgaatgtacagACACCAGACAACCTAAAGTGAGGAGCTTTTTTCCATTGAAGAGGACAACAAAGAAATGGAACTGTAGTTCTCATTCTCATATACTGTATCTAATGAGGGAATAATTATTAACCATTATCTATTAAGTCTGTCAACTGGCACtcttctgatttattttgtattttattaacttgtCTTTTTATATGTTGGAATATAACactagatttttttatttattttttgcctgtAAGAAGATGCACCATGCTGAATTGTAATCCTTTGTTCCATGACCATGTGTAATGAGGGAAAGGGCACTTTTTCAATTCAGGTATCTTTCGGGAAGAAATGTTGAATGTCAAGTATTGCATGAAATCTGATCATTTGTGGAAAtgttcctttatttgtttttcttgttcgTTTTCCCATGTTGGAATCATTTTCTTGAAGATCACAAGGCTTTTCTAAAAAATAAGTACACAGGACAGTATTTATTACCAGAGCCTGTTTCACTGGACAAATGTATAAGACAAATAGTTGAACATAGATTTCCCATATTTTTCAGGCAGTGGATTTAGCTCAAACAAATTTCCCTTATTGaagacaatttacatttttctttaatgctGTTTGTGCCTTATTGTCTGGGAAAGCTAAAACTGAAGGTTTACAAATGTCTTTCAGTGTGTCTACTACAAGGCCATCGGAAGACAATCTCTAACCACTGTTCTGTGGACACTCACAAATGAGCTTGAAGTATCGATATGCAGTAATGCCATTCATTTGCAAATCATTCCGAGAAATGTTCATCCACTTTTCCCACCTCCCCCCGCTTTAATACCACCATGGCATTTTCCAAGTTTGATTTGTATATGTTGAATGTTGAGCTGTAGGTTAAAAGCAACATTCATCCTTCCTGACATTGCTCTTTAATACTGGGACACACTAAcccataaaatgtatttgaatgagCAGCACACCTATTTACAAGATTAGTTGGATTATAGGATGGTATTAATGTACATACTGTAGAAatctgtttgtgtatgtgtagcATAATTGAATGAAGAACTACATTAATCCCTGTGGCAGTCTTAACTCGGTTAAATTAACTGGAATAtaggataaaaaaatatatccctGATTTAATAGGGTTTtgtgaatatttatattgttttaaggaAGCAAGGTATGAATAGTTCAAACCACAATTGTAAGTTATAGAAGTATAAATTAAAACCTATTTGTAGATGAAACGGTCTGTTTTTTGCCTATgataagtttaattttaaagtttcaAGCTTTCAAACTTAATATTAGCAGAAAAGTATCGGCACAAGCAACAAAAGTAGTTGTGTCAGTTTAAGGAAAGACTTGTATTCACTATATGTGCTGAATCTGATCAACACTTTACTGGTTGGGAGAAACATTTATTGGTTGAGGTATCCTAATGGAGATAAGTTAGAAGGATGATGAAGGTTGTTTGTATTACCTGAGAGGAATTGCTATGCTGTTCTATCAATCCTCAATTTTCCTCTTACGCAGACAATTTAAGGGCTTGAGCATTCCTTTTCCTCGTTTTTGTCTTTCCATGTTTCATGCGTTGCATTATTAGTTTCCCataaattgcatttttgcaCAGTGCATCTAGTCTTTAGGAAATTGAAAGAGTTTAATGTAATGATCACgtttaactgaaatataaacTTGTGAATCTTGCAACTTTATTAATGTAAAGCTGtaactgaaatgttaaaagcattttaagacCCTGTTGTAAGATTTAACTACACATAGTATTGATCTGTCTATGATCTGTAACCATTTTTCTTGTGACATTTTGCTTAAGAAAAAATCTGTCTGACAATCTGTTGAATGTCACCCTCACCTATGGTAAATTAACATTTCCTGGAGTCATGATAGCTTTGTCACTTATGGAAGAAgtttaatgtcatattttgtGATACAACTACAGCCGACTGTCATCAAGGACCTGCCATTTCCAATTAATGGTTTGGTCAGTTGTAGTTGACAGGGCATTGTGTTATTCTCAGTTCAGTAGTTCTGATGTAATTTGAAATGCCttgcttatttgtatttgtattgtaagagCTAGAACACACTTGATATCTCACCAGGAAAAGATAAACTGGGTAACTAGCATGAAATTCCATTAAACAGTAAGTGACCCAGTTTGGCACCATCTTACCTGACTCTGTACGCCTTCTGTGAAGGGCTAATAGCTGTGTGTATCTAAAagactataaaaatatatatacattacattttctaaagaaagaaattgatacttttaaatcacattgttcCTAAAATGAAGCATTGTTGTATATCATGAGttctttttgtctgtttttattttgtactttatgtAAAGTATAAGCCTGACTAGACATAGTGCTTGTGCTACTACATGGGTCATTAAGGACACAGTATCCAAGTCTGCCAATGTTATCGTACAACCAGAAGAACAATCAAGTGCCACAGGAAGAGGGATGAACTCATGGCCCAATGGTTATTCATCTGCCAGTAAACCATGAAGGTgccttttaaaatctttatacTGTTTGTCGTCGTCGTCCCCCATCGCAGAAGCATAGATCCATTGAAAAGACTTGCAAGTTTCTTTGTAACTAGTGTAtcttattaattttgaaaaaagtCTGACTTTCCTGGAGAAGTGCAATACAGCTACACAAAATGAATACCCTGCAAGCTTCATTACAGATGACTTTAAGCTATGGTTATAAGTaatcctttttttatattttagattttgaaCCTTAACTAAGCGTGAATGTAATATGACCGTAGGAGAAGCTTTAGAATCGGATACAcaagagttaaaaaaacaatacatttaaattaaatttgaaaagcaCTCTGGCCTGCTTTAGCTCTTCAGATAGgcttctgaaatgtttttctcacattttatcaattaaaattgtatgtttaaaCCACAAATGTGTGGCACAGAAGGTAGCATGGCCATAATTATCCAGACTTTCACTAAATAGGCACTGTCAGACATTACAGATACAAATTAGGCTTATCCGGCACTTGCCTTTTCAAACTGTTGGCATTAAACTGCAATTATTGCCTGATGGCTTATTAAATGTAGTCGGTTTTTAAGAATATGCAATATCTTTATCAGAGaccaatttaaatgcaaattttcaAAAAAGCAGccttcttttctctcttcccccccccccccccccccccc

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007154 cell communication biological_process
GO:0035091 phosphatidylinositol binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01115 PLD1_2; phospholipase D1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009079 True 6397 mRNA 0.41 24 24461938 24498489

Neighbor

gene id symbol gene type direction distance location
AMCG00009072 ghsra,LOC107732507,LOC107680230,LOC107550603,LOC107586567,LOC107688542 coding upstream 239971 24218804 ~ 24221967 (+)
AMCG00009070 NA coding upstream 245091 24212416 ~ 24216847 (+)
AMCG00009069 NA coding upstream 255417 24200357 ~ 24206521 (+)
AMCG00009066 NA coding upstream 390208 24063842 ~ 24071730 (+)
AMCG00009064 stag1a,stag1,LOC107722576,LOC107688487,LOC107709887,LOC107586054,LOC106575446 coding upstream 411994 24029392 ~ 24049944 (+)
AMCG00009076 tnik,LOC103024681,LOC107721871,LOC107663657 coding downstream 67950 24566439 ~ 24631632 (+)
AMCG00009078 NA coding downstream 135901 24634390 ~ 24647480 (+)
AMCG00009077 eif5a,LOC107590245,LOC107685442,LOC107586748 coding downstream 151225 24649714 ~ 24654285 (+)
AMCG00009080 rpl22l1,rl22l,LOC107721850 coding downstream 165814 24664303 ~ 24666228 (+)
AMCG00009081 LOC108442332,LOC107680258,LOC107732514,LOC107550597,LOC107688500,LOC107584921,LOC107722625 coding downstream 263527 24762016 ~ 24780751 (+)
G54356 NA non-coding upstream 183377 24277905 ~ 24278561 (+)
G54328 NA non-coding upstream 295877 24165790 ~ 24166061 (+)
G54264 NA non-coding upstream 567651 23890127 ~ 23894287 (+)
G54238 NA non-coding upstream 797286 23664157 ~ 23664652 (+)
G54237 NA non-coding upstream 797844 23663393 ~ 23664094 (+)
G54430 NA non-coding downstream 285021 24783510 ~ 24787085 (+)
G54547 NA non-coding downstream 673512 25172001 ~ 25172864 (+)
G54563 NA non-coding downstream 809771 25308260 ~ 25308495 (+)
G54566 NA non-coding downstream 848789 25347278 ~ 25348983 (+)
G54580 NA non-coding downstream 906181 25404670 ~ 25413822 (+)
G54263 NA other upstream 486032 23883317 ~ 23975906 (+)
G53917 NA other upstream 3168037 21292241 ~ 21293901 (+)
G53915 NA other upstream 3186584 21274611 ~ 21275354 (+)
G53911 NA other upstream 3293363 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 4065582 20376795 ~ 20396356 (+)
AMCG00009085 NA other downstream 314129 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 399627 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 991222 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 1086393 25584882 ~ 25587615 (+)
AMCG00009129 NA other downstream 2295048 26793537 ~ 26796768 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015464 pld1a coding NC_007113.7 CM002886.2 25560556 ~ 25632090 (+)
grasscarp (Ctenopharyngodon idella) CI01000004_08382042_08402126 PLD1A coding CI01000004 null 8380472 ~ 8402514 (+)