XLOC_015464 (pld1a)


Basic Information

Item Value
gene id XLOC_015464
gene name pld1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 25560556 ~ 25632090 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030926
TAGTCTGTTTGGAGtcacagagagggagagagactcTTTTAACGCTGTCTGAAAAACTATGAGTTAGTCTTTCACTGTTGTGGGAGCCAAACAGCTGATAAATCATGTGGAAATCACCAAAGCAGGCAATGCTGGACCCTTAAGCTAAAGAATGCTGAATACACTTCGGTGAATCCAAAGGAAGCAACTCCATCTGATACAAGCAGACATGAGTGATTCGGTGGAGAACCTGGACACCAGGGAACTGGGCTTCTCTGATGCTGAGGATGAACCTGAAGAGGTGGACTTTGACTTCAACCCGTcagGTGCGTCCCGTATTGGGTTCTCTGCCATCTACCGGACAGTTGGCTTTAAAGACACAGAAGCACATGTCTATCTGACCTCTCTCCCAATTACTGCCAAGATCCTGGATGTGGAGCGCTTCACCAGAACTCAAGACCGCTTCAAGTTCTCCAAACACAGGAGCGTGTCTAAGGCAATGCCAGCAGTGTTTAAGATAGAGCTCAAACATGGGAACTTCACCTGGATAGTGAAGAGAAAAGAGAAGCACTTCATGGAGCTGCACAGAGAGCTCCTGAAATACAAGACCCTCATGAGGATCCCACTGCCCACCCGCAGCCACACAGAGAGAAGGAAAAGCATCAAGAGGAGTGAGGTGAGGCAGATGCCAGCTCTGCCCCGGGGAGGTGGAGATGGAGAGCTGGCGAGAGAGGAGCAGGTGTCTAGTCGAAGGAAACAACTGGAGGACTATCTAAACAAGCTGCTGAAGATGGCGATGTATAGAAAATACTACGCAACGATGGAGTTTATTGATGTGAGCCAGTTGTCCTTCATTCAGGACTTGGGCCCAAAAGGATTAGAAGGCATAGTTTATAAGCGGTCAGGAGGTCATCGTATCCCGGGCATGAACTGCTGTGGCCACAATGAAGTCTGCTACCGCTGGTCTAAGAGgtggCTTATTGTGAAGGACTCTTTTTTGCTGTATATGAAGCCGGACACTGGTGCCATTTCATTTGTCCTACTGGTGGACAATGAGTTTAGCATCAAAATGGACTCCAAACAAACAGAGACGAAGCATGGAGTGAGGATAGAAAACCTGTCTAGGAAACTAGTGCTGAAATTCACTAGTTACAGACATGCCCGCTGGTGGGGGCAGGCCATTGAAAGCTTTGTGAGGAAACATGGCAAGGCTTTTTTGAGGACCCACAGATTCGGATCCTTTGCCAGGGAGGAGGAGAACATACCCTCTAAATGGTATGTTAATGGCAAAACCTACATGGAAGATGTTGCAAATGCCCTAGAGGAGGCCAAAGAGGAGATCTTCATCACAGACTGGTGGCTGAGCCCTGAGATCTTTCTGAAGAGGCCTGTGGTGGAAGGCAATCGCTGGAGGCTCGACTGCATTTTGAAACGCAAGGCTCAACAAGGAGTGAGGATCTTTGTTATGTTGTATAAGGAAGTGGAGCTGGCACTCGGCATCAACAGTGAATACAGCAAAAAAACACTAATGCATCTTCATCCAAACATTAAAGTGATGAGACACCCTGATCACGTGTCCTCCTCCGTCTACTTATGGGCACATCATGAAAAGATTGTAGTGATTGACCAGTCAGTTGCTTTTGTTGGTGGAATTGACCTGGCTTATGGCCGCTGGGATGACCGTGAGCACCGGCTGACAGATGTGGGAAGTGTAACACGATCTGTTGCTCAAGCCATAGAGCAGGGACTGGATTCATCCACACCCAAGAAGAAAGTGTCCACCAGTGGGAACAGCAGCCGGTCAATGGTTGGTGACTCAGTGGATCTGCCTAAACTAAAAGGCATCGGTCGCACTCGCAAGACTCGTTTTAGCCTGTACCATCACATCCAACGTGGCCTTCACCATGCTGACAGCATCAGCAGCATCGACAGCACAAACAAGAGTGGCTCAGTGCACAGTCTTCAGACAGGAGTGGGAGAGCTGATGGGAAACACACGCTTCTGGCACGGCAAGGACTACTGCAACTTTGTCTTCAAAGACTGGGTTCAGCTGGACAAGCCCTTTGATGACTTTATCGACAGGTACACAACCCCTAGAATGCCCTGGCATGATATCTCCTCAGTGGTGCATGGAAAAGCAGCCAGAGATGTGGCCAGGCACTTTATACAACGCTGGAACTTCACCAAGATAATGAAGCCGAAGTACAGATCGCTCTCCTACCCATTTCTACTTCCTAAATCTCACAGCACAGGCAATGATCTGAAGTACCAAGTGCCAGACACTGTTCACACCAAagttcagGTTCTGCGGTCGGCAGCAGACTGGTCAGCGGGCATCAAGTACCATGAGGAATCCATTCATAATGCCTACATTCAGGTCATTGCCAAGAGCAAGCACTTCATCTACATCGAGaacCAGTTCTTCATCAGCTGTGCCGATAACAAACATGTTTACAACAAGATTGGTGACGCCATTATTGAGCGAATCATCAGAGCACACAAGGAGAATAAAAAGTTCCGTGTGTATGTGGTGACTCCTCTTCTGCCTGGATTTGAGGGAGACATTACCACAGGAGGAGGAAATGCACTCCAGGCGGTTATGCATTTCAACTACAGGACCATGAACCGAGGAGAGTACTCCATAATCTCTCAGCTAAAGAAGGAAATGGATGACCAGTGGATGAACTACATCTCCATCTGTGGTCTGAGGACTCATGCGGAGCTGGAGGGTCGACTGGTGACTGAACTCATCTATGTTCATAGCAAGCTGCTTATCGCTGATGACAACACCGTCATTATCGGCTCTGCCAACATAAATGACCGCAGCATGTTGGGCAAGAAGGACAGTGAGGTGGCTGTGATATTTGAGGACTCTGAAACCACGCCATCAGTGATGGACGGTCAAGAGTACCAGGCCGGCAAGTTTGCCCTTCAGCTCAGACTGGAGTGCTTCAAGACCATTCTTGGTGCCTTTACTGACCCAAGCATTGACGTCAGCGACCCCATCAGCAACAGCTTCTACAAGGACGTCTGGATGAGCGTCTCAGGTCGAAACGTCACCATCTACGAGAAGGTTTTCCGCTGTCTGCCCTCCAGCCTGGTGAGAAACAAACAGGAGCTCCTGAGTTTCCAGTCCAAAACTGGTCTGGATAAAGAGGATCCACTTAAGGCTCAGGAGCTGCTGAAGAAGATCAGGGGCTTCCTGGTCCAGTTTCCCCTAGACTTCCTCTGTGAGGAAAACCTCATGCCCTCGGTGGGCACCAAAGAACACATGGTGCCCACCGAGATCTGGACCTGATggtcaaaaaaagaaaatccgCATCCAGGATGAGAAAAACACTGTGATCAAATGAAATCTGGTTCATAAAATTCCACATCAGAAGGAAGAAACGAAAACAAACTATCCAGCCTTTGTCAAGAAAGAAACGGACTGCTTCACATTGTTTTGTACCTTTTATCAATGTAAATAATAGTATTTTATAAGCACAGTGATTATCATCACATATTATTGTGTTTCTTAAACGTATGAATGAATATTGATGCCAATCAGAAgggctttttaataaataatataaatattaatgcacATATGAAGAGGACTTGGTTTTTAATGCTCATTTGTAGAAGCAGCACTCAAAGTGAAAAGTAAAATGGTGAGTAAAAGCCCTGTCAGAAAGGCCTTTGTCAGGACGGCCTGTTTTTCAGCTGGCCGTCCCCAGTGAAGGCGCATCCATGACAGGCTGAGCACTGTGATCTGTGTTTTCTGTCTGGCGGAGGCTTTTAACGTCCAGCGCCCTCGCCGGTGTCAAAGTGTCAGCGCTCTGGGAGAACAGACAGTCTGTCTGCAGCTTCAAGTGCTGAGAAACTGAAGGAAATTAGTTTTTGGTCTCTCTCAACACCAAACTCAGGCATGTGGTGCTTAATTCTACATTTTCCCCTTCACAGATCTGGCTCAGGTCAGTTTGCATGAGTCGGCACTTGTTGCTGTGTTCACTTTGCCTGTTGGTGTTCATCCGGTGAGTCTTTTTTTGCCCATCACGCTCTTATTTCTGTGGTATTTAGAAGTTTTTCTAATCTTACCTGTTTGTTTGTCCCCTCAAATAAAGAGTACTGTATATGAATACACTACCACACTACATTTGGGGTTGGTAAATatgtaaatgcttttaaaaaaagtatattatgctcaccaaggctttatttgtttaatgtcaATAGCGTAAAAATggcaatattgtgaaatattattaggatttaaaagagtttttgttcctgtttgaatgtattttatcgtgtaatttattcttgtgatagcaaaactgaattttcagcatcattacccATTCAGTCTTTAGTGTCATATGATCCTTCATTCTAATGTGATGATTTGGAAGAAACATTTCTTGTTATTATCAGTCTTAGAAACAGTTGTGCTGCTGCCAAtgtgatattttttttgtaataaattacatttacaaaata

Function

symbol description
pld1a Enables phospholipase D activity. Acts upstream of or within angiogenesis. Is expressed in liver; notochord; pharyngeal pouch; and somite. Human ortholog(s) of this gene implicated in developmental cardiac valvular defect. Orthologous to human PLD1 (phospholipase D1).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006654 phosphatidic acid biosynthetic process biological_process
GO:0001525 angiogenesis biological_process
GO:0048870 cell motility biological_process
GO:0048017 inositol lipid-mediated signaling biological_process
GO:0032534 regulation of microvillus assembly biological_process
GO:0016042 lipid catabolic process biological_process
GO:0070290 N-acylphosphatidylethanolamine-specific phospholipase D activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:0004630 phospholipase D activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031002-2 Enables phospholipase D activity. Acts upstream of or within angiogenesis. Is expressed in liver; notochord; pharyngeal pouch; and somite. Human ortholog(s) of this gene implicated in developmental cardiac valvular defect. Orthologous to human PLD1 (phospholipase D1).

Ensembl:

ensembl_id ENSDARG00000056228

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030926 True 4461 mRNA 0.46 26 25560556 25632090

Neighbor

gene id symbol gene type direction distance location
XLOC_015463 fndc3ba coding upstream 15706 25315591 ~ 25544850 (+)
XLOC_015462 ppp2r3a coding upstream 269375 25198648 ~ 25291181 (+)
XLOC_015461 NA coding upstream 422767 25130523 ~ 25137789 (+)
XLOC_015460 msl2a coding upstream 431147 25124498 ~ 25129409 (+)
XLOC_015459 stag1a coding upstream 451969 25019387 ~ 25108587 (+)
XLOC_015465 tnika coding downstream 25868 25657958 ~ 25837986 (+)
XLOC_015466 eif5a2 coding downstream 207103 25839193 ~ 25845337 (+)
XLOC_015467 slc7a14a coding downstream 228254 25860344 ~ 25990784 (+)
XLOC_015468 CR392012.1 coding downstream 402085 26034175 ~ 26039606 (+)
XLOC_015469 grin3ba coding downstream 428438 26060528 ~ 26156784 (+)
XLOC_015456 NA non-coding upstream 632802 24912293 ~ 24927754 (+)
XLOC_015455 NA non-coding upstream 653941 24903666 ~ 24906615 (+)
XLOC_015449 NA non-coding upstream 839769 24716314 ~ 24720787 (+)
XLOC_015446 NA non-coding upstream 948488 24603292 ~ 24612068 (+)
XLOC_015470 NA non-coding downstream 534488 26166578 ~ 26167419 (+)
XLOC_015473 CR788230.1 non-coding downstream 654375 26286465 ~ 26287505 (+)
XLOC_015478 NA non-coding downstream 881518 26513608 ~ 26519549 (+)
XLOC_015479 NA non-coding downstream 960605 26592695 ~ 26595418 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_08382042_08402126 PLD1A coding CI01000004 null 8380472 ~ 8402514 (+)
bowfin (Amia calva) AMCG00009079 NA coding CM030126.1 CM030126.1 24461938 ~ 24498489 (+)