XLOC_015466 (eif5a2)


Basic Information

Item Value
gene id XLOC_015466
gene name eif5a2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 25839193 ~ 25845337 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030931
AATTTGCCACTGCGCAGCTGAAGCAGTTTCTCCTCGTGCATGTGAAACTCGTTGCAGTAAAGGTGCACGCACGCGCATGCGCAGGTCTCTCCGTCTTTTGTTGGAAGGGAATGACTGGCGTTTTTAATGCTCTCCGCTCCAGCATCGCTACATTTCTAGTCGAATCCTCTGAATAAAGTACAGAGGCCGGATTCAACTCTTGAAGAGGATTTGGTGATTGAAGACGGTGTGCCGAAGCGGTCGATTGTGTGATCAGAGCGTTTGGAAACTTCTTCGATAACCCATCATGGCTGATCTGGATACTGATTTCACCAGTGGAGATGCTGGAGCTTCCCTGACCTTTCCCATGCAGTGCAGTGCCCTGCGGAAGAACGGCTTTGTGGTGCTCAAGGGACGTCCATGCAAAATTGTGGAGATGTCTACCTCCAAGACTGGCAAGCATGGACATGCCAAGGTGCACATGGTTGGAATTGACATATTTACTGGAAAGAAAAATGAAGATATCTGTCCCTCCACCCACAACATGGACGTTCCTAACATCAAGAGACAGGATTACCAATTGGTTGGCATTATCGATGGTTACCTTTCCCTTATGAAGGACAATGGAGACTTGCGTGATGACCTCAAGCTGCCTGAAGGCGATCTGGGCAAAGAAATAGAGAGCAAATTTGAATCTGGAGATGAATTTCTGGTCTCTGTTTTGGCTGCCATGGGGGAAGAGTGTCCCATCGCCATCAAGCCCATGAGCTCATAATGAACCGAAGCTGACCAGCTGGTTGAGTGAGGGCCTCCATAccacaaatattacattttagttcttaaaaaaacaaaaagtcaccAAAGCCACAGCCTTCACACACACCACCCAGAATTGGTTCTGTTAAACAGTAAAGATGCTGGACCTTTTGACCCGTCTCATGAGGTTTTGTCTAATCAGCATAATTCCACATCACCAAGGGTTTCCTGCACGCTTGTTATTTTGCCCCCTGTTCATTCCATTTTCATTATTCCAATGCACTTTTACCATTCATTATTAAAgatgagaatatttttttttaattctcgaATTATTGCAGAAACCTTTTTATCCATGCCGACGGGCCTTAAAACTGTTGCAGATCAGGCAGCAAACATAAGATTTACCTCTGTGAATGACACTGACTGGTTTGCCGGCGTTTGGTACATCAACGTTTGTGCCAAAGCCTGTGTGTCTCAGGTAGGCTAGGGTTTGTCTGACAGCTTGGCACTGATTGGGGCGACCGACAACTAGCAATCCTAAGGCAGAATATGGACTAAAACTTTTACTGACATTAAATCCAGACCAAATATTCTTTGTTTTTTGGGGAAGTAATCCTGTGTAGTTTGACTCCACTTGACGGTTtgagcaggtttttttttttcttttttaagtttaCAGCATTTCCCCTCATccataattaacatttattttggtaGTGACAgcaataacccagcatttttatgtTTTGGTAGTAGTAAGGGAGAATGATTATAAGAAGGGCCGTTGAGCTTTACACTGGCTAACCTGCTGTAAGTCAGCAGTAATGGACGCCCTCTGTAACAAACTCTGTTTACAGTAGCTTTGCTATACAACAAATTTTTATTCCGcagaaattagtttatttttttgtacttgcACACAGACACAGTGTGCGCACTAAAGGGCTTTAGCATCAACACTTCTATATTCACTTCTTTCTGATATAagagtattagtagttttttttccccctattACAGTTTACGATTGGCTTGTGTAGTATTTTGCCGTATAAAACTTTTAATTTACTCTTGAGATTCCATTTTTGATGTAGAGATGAGTTGCTTTTCTATCTTTGCATTTGGCTTTTCCTAGTGTTAGTTTTGATTTTTCCTTTTGGTAATTGTTTACTGTGCGATGGCTCAGCAAAATGAAAAGGCACTTGTTGGGCAGAATGTTTTTTTAGAGGTATTTTCATCACCTGTTTCGACTAGTTGATGTTATTGTAAAGTTAGCTCTCGTATAAACAGTAGCCGTAGATCTGAGAGCTCAAGTAGGTGGAAAGTGTTGTATGACTGTACAGTATTTCAGACGCATATCATACTCTGCGAGTCTCTCAGGTTTCCAGTGTTtggttattttgctgtttgtagTATTGGTCCTAATTCTAAAATacctctctatttttttttctgcaaaacatGTATTCATACCTGCAAGAGAATcacatgcttttttatttgtcGCATGCATGTTATCGGTTCATTTCCTAAATTCAGCAGCTTGACTATCAGTGACGGGCAGAAAGAAGAAATGTGGGCTTTGTTACCATTTCAAACTGTGAGAAGGTGCTTTGTCAGACATGAAATGATCGAGAAATTATAGTGTTTGAGTTTTTCCACACAGCTAGTTGAATGAAGCGTAAGAAGCCACAGTTTTTGGATATGAGGGGAGCAATTATAATAAACTCAACTGAAAAACTAAAGCTTTTGTGTATTATTTTCAGACTTCACACTTTTTGCAAAAAGACTGGCTAGTCGCAAGAACTTTTTTGGCTCGTTTTAATCCGGGTTAATCTTTCTGTAAACTGTAATATTGTGGGAATATTATTACTGATGTATTGAAATGTATGCTCTACTTGGTGACCATTTTAAAATTTGTGTAATTCAATCCTGTGACGTTACAGCTCTGTTTTCAGCATTATAACTCCATGATCTTTAAGAAATTATTGTGGTGTTTTCCCCCAGATTCtgaatactttaaataaataaataaataaataaatcttatgtCAA
>TCONS_00030932
ATGAATCGGGCAACTCCGTAGCGTTAGTTCCGGTTAACTTTGTGTGCCGCTGGAAAAAACTTCTTCGATAACCCATCATGGCTGATCTGGATACTGATTTCACCAGTGGAGATGCTGGAGCTTCCCTGACCTTTCCCATGCAGTGCAGTGCCCTGCGGAAGAACGGCTTTGTGGTGCTCAAGGGACGTCCATGCAAAATTGTGGAGATGTCTACCTCCAAGACTGGCAAGCATGGACATGCCAAGGTGCACATGGTTGGAATTGACATATTTACTGGAAAGAAAAATGAAGATATCTGTCCCTCCACCCACAACATGGACGTTCCTAACATCAAGAGACAGGATTACCAATTGGTTGGCATTATCGATGGTTACCTTTCCCTTATGAAGGACAATGGAGACTTGCGTGATGACCTCAAGCTGCCTGAAGGCGATCTGGGCAAAGAAATAGAGAGCAAATTTGAATCTGGAGATGAATTTCTGGTCTCTGTTTTGGCTGCCATGGGGGAAGAGTGTCCCATCGCCATCAAGCCCATGAGCTCATAATGAACCGAAGCTGACCAGCTGGTTGAGTGAGGGCCTCCATAccacaaatattacattttagttcttaaaaaaacaaaaagtcaccAAAGCCACAGCCTTCACACACACCACCCAGAATTGGTTCTGTTAAACAGTAAAGATGCTGGACCTTTTGACCCGTCTCATGAGGTTTTGTCTAATCAGCATAATTCCACATCACCAAGGGTTTCCTGCACGCTTGTTATTTTGCCCCCTGTTCATTCCATTTTCATTATTCCAATGCACTTTTA
>TCONS_00030933
GCTGGAAAGTGAGTCATTCATCCAGCTAAACTCTCTTAGACGACTCGATTCAACGTAAACGAGTTTAAACTTCTTCGATAACCCATCATGGCTGATCTGGATACTGATTTCACCAGTGGAGATGCTGGAGCTTCCCTGACCTTTCCCATGCAGTGCAGTGCCCTGCGGAAGAACGGCTTTGTGGTGCTCAAGGGACGTCCATGCAAAATTGTGGAGATGTCTACCTCCAAGACTGGCAAGCATGGACATGCCAAGGTGCACATGGTTGGAATTGACATATTTACTGGAAAGAAAAATGAAGATATCTGTCCCTCCACCCACAACATGGACGTTCCTAACATCAAGAGACAGGATTACCAATTGGTTGGCATTATCGATGGTTACCTTTCCCTTATGAAGGACAATGGAGACTTGCGTGATGACCTCAAGCTGCCTGAAGGCGATCTGGGCAAAGAAATAGAGAGCAAATTTGAATCTGGAGATGAATTTCTGGTCTCTGTTTTGGCTGCCATGGGGGAAGAGTGTCCCATCGCCATCAAGCCCATGAGCTCATAATGAACCGAAGCTGACCAGCTGGTTGAGTGAGGGCCTCCATAccacaaatattacattttagttcttaaaaaaacaaaaagtcaccAAAGCCACAGCCTTCACACACACCACCCAGAATTGGTTCTGTTAAACAGTAAAGATGCTGGACCTTTTGACCCGTCTCATGAGGTTTTGTCTAATCAGCATAATTCCACATCACCAAGGGTTTCCTGCACGCTTGTTATTTTGCCCCCTGTTCATTCCATTTTCATTATTCCAATGCACTTTTACCATTC
>TCONS_00030934
AATCATTTCTATAAACGCTTTGGTAACGTTAAGCAGCTAACTTAATGTTTTACCTCGCTTGACGAGATAGCCATTATGGTTTTTTTTACGAAAAACGTCGTTGTGGTTAATCCAAGCTAACTTGATAGtcaaagtttgtttttttgtttgtttgttttttttttttacctcaattgTAAACGTTTTGGGAAAACTTGATATTTGTGTTTCACAGAGCAAAGAAACTTCTTCGATAACCCATCATGGCTGATCTGGATACTGATTTCACCAGTGGAGATGCTGGAGCTTCCCTGACCTTTCCCATGCAGTGCAGTGCCCTGCGGAAGAACGGCTTTGTGGTGCTCAAGGGACGTCCATGCAAAATTGTGGAGATGTCTACCTCCAAGACTGGCAAGCATGGACATGCCAAGGTGCACATGGTTGGAATTGACATATTTACTGGAAAGAAAAATGAAGATATCTGTCCCTCCACCCACAACATGGACGTTCCTAACATCAAGAGACAGGATTACCAATTGGTTGGCATTATCGATGGTTACCTTTCCCTTATGAAGGACAATGGAGACTTGCGTGATGACCTCAAGCTGCCTGAAGGCGATCTGGGCAAAGAAATAGAGAGCAAATTT
>TCONS_00030935
ATCATGGCTGATCTGGATACTGATTTCACCAGTGGAGATGCTGGAGCTTCCCTGACCTTTCCCATGCAGTGCAGTGCCCTGCGGAAGAACGGCTTTGTGGTGCTCAAGGGACGTCCATGCAAAATTGTGGAGATGTCTACCTCCAAGACTGGCAAGCATGGACATGCCAAGGTGCACATGGTTGGAATTGACATATTTACTGGAAAGAAAAATGAAGATATCTGTCCCTCCACCCACAACATGGACGTTCCTAACATCAAGAGACAGGATTACCAATTGGTTGGCATTATCGATGGTTACCTTTCCCTTATGAAGGACAATGGAGACTTGCGTGATGACCTCAAGCTGCCTGAAGGCGATCTGGGCAAAGAAATAGAGAGCAAATTTGAATCTGGAGATGAATTTCTGGTCTCTGTTTTGGCTGCCATGGGGGAAGAGTGTCCCATCGCCATCAAGCCCATGAGCTCATAA

Function

symbol description
eif5a2 Predicted to enable translation elongation factor activity. Predicted to be involved in positive regulation of translational elongation. Predicted to act upstream of or within several processes, including mRNA transport; positive regulation of translational termination; and translational elongation. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be part of nuclear pore. Orthologous to human EIF5A2 (eukaryotic translation initiation factor 5A2).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0045901 positive regulation of translational elongation biological_process
GO:0045905 positive regulation of translational termination biological_process
GO:0043022 ribosome binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2405 Predicted to enable translation elongation factor activity. Predicted to be involved in positive regulation of translational elongation. Predicted to act upstream of or within several processes, including mRNA transport; positive regulation of translational termination; and translational elongation. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be part of nuclear pore. Orthologous to human EIF5A2 (eukaryotic translation initiation factor 5A2).

Ensembl:

ensembl_id ENSDARG00000056186

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030931 False 2793 mRNA 0.40 5 25839193 25845337
TCONS_00030932 False 814 mRNA 0.46 5 25839650 25843567
TCONS_00030933 False 830 mRNA 0.45 5 25839698 25843573
TCONS_00030934 False 626 mRNA 0.42 4 25839940 25841085
TCONS_00030935 True 471 mRNA 0.48 4 25840463 25843298

Neighbor

gene id symbol gene type direction distance location
XLOC_015465 tnika coding upstream 1207 25657958 ~ 25837986 (+)
XLOC_015464 pld1a coding upstream 207103 25560556 ~ 25632090 (+)
XLOC_015463 fndc3ba coding upstream 294343 25315591 ~ 25544850 (+)
XLOC_015462 ppp2r3a coding upstream 548012 25198648 ~ 25291181 (+)
XLOC_015461 NA coding upstream 701404 25130523 ~ 25137789 (+)
XLOC_015467 slc7a14a coding downstream 15007 25860344 ~ 25990784 (+)
XLOC_015468 CR392012.1 coding downstream 188838 26034175 ~ 26039606 (+)
XLOC_015469 grin3ba coding downstream 215191 26060528 ~ 26156784 (+)
XLOC_015470 NA coding downstream 321241 26166578 ~ 26167419 (+)
XLOC_015471 plppr3a coding downstream 333759 26179096 ~ 26209425 (+)
XLOC_015456 NA non-coding upstream 911439 24912293 ~ 24927754 (+)
XLOC_015455 NA non-coding upstream 932578 24903666 ~ 24906615 (+)
XLOC_015449 NA non-coding upstream 1118406 24716314 ~ 24720787 (+)
XLOC_015446 NA non-coding upstream 1227125 24603292 ~ 24612068 (+)
XLOC_015473 CR788230.1 non-coding downstream 441128 26286465 ~ 26287505 (+)
XLOC_015478 NA non-coding downstream 668271 26513608 ~ 26519549 (+)
XLOC_015479 NA non-coding downstream 747358 26592695 ~ 26595418 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00011697 eif5a,LOC107691471 coding CM030138.1 CM030138.1 2387612 ~ 2393372 (-)