XLOC_015469 (grin3ba)


Basic Information

Item Value
gene id XLOC_015469
gene name grin3ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26060528 ~ 26156784 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030941
ACCGTGGCTGCATCCGCGCGCGCGTAAAACCATTAAGGACAAGAACAACTGGACAAAAATAGAGCGATGCCATCTTGTGACGAAACCTCAATCCAGTTGCGAAAGGAGCAGGATGAATTTAGTGCTCTTCAGATTCTTGGCATACCTTCACGTTGGGCTCCAGGTCGCTCTCCAGATGTTTATTTACCCTTGTCATCTGCATCCCCAGCCCTGTCACATCCTGGCACGCATTGGGCACACCGTGCGCTTGGGTGCGCTCCTGCCGACCCGCCAGCAGTCCAGGATACAGGGCGCCCTCAACCGCGCCCTGGTCCACCTCCGGCAAAGTGGGAACAACTTCTTGCCCTACAACCTGAGCTTGGAAGTATTGTCCCGAGAACCGCTCAATGGAGACCCGGAGTCCATGTTCAGGTGCGTGTGCCAGGATATCGTTGTTCAGGGAGTCTCGGCTGTGCTCGCGTTCCCCCAGAGCCACGAGGAGCTCATACAAGTGGAGTTCATGTCCTCGTTTTTGGAAATACCCTTCATCAGCATCATTGAACAGGGTGAACCTCTTAAGACACAGAACCGCTTCCATTTGCAGATGATGACTCGAATGCCTCCTTCAGGGCTCTCGGACCTGCTTTTGGCTGTGTTGCTGAGGGGGGGCTGGCAGGGTGGAGCGGCAACTGTCTGTCCGGGAGGTGGGAATACTGGAATGCTGGAAGAGCTTCAACAGCGTGGTCACCTAGGTTTAGACGGAGCCCACTGGCACCTTTGGGAGACTCTCAATCTGTCCAGACTTGAGGAAAATATAAGCGAAGACAAGGTAATGGAGCTCCTATCGCAGCTCCTCAGCAGGACTCCTTCTGCTCCAGCGTCCTCCGTGGTGCTTTTCGGCTCCGACCCTGAATGTACAGCCACAGTGCTGCACTGTGCCCATCAGTTGAGTGGCACATTGCCCCCTATGCACTGGATCATGGGATACCCGCTTAGTCTGGATTCTCTACACTCTATTGGCTCCCCGCTTGGTCTTATGGCTTATGGGGAGGTCAATCGCAAACCCTTGAACTTCTACATTAGGGACACCCTGCAGCTCATTGGCAGAGCTGTATATGCTGCTACCATGGTGAGACCAGATTTGGCACTCATTCAAAACATGGTAAACTGTTTCGACAAGCCCAATAAACATGAGCTACCCTCCTCCGGACAGTACCTTGCCAGGTTCTTGTCGAACACTTCCTTCACTGGGCTGACAGGCCCTGTGCGAGTAGAGCGCTCTTTCTCCAGAGTCCTTACCTCCCAACGCTTTCACATTTGGAGTCTCCAGCGGGATCCTCTAGGCCAGCCAAGTTGGGTGACCGTGGCAAGCTGGCAGTCGGGCCGACTGGAACTGGAGGAACAGGGCCTGTGGCCAGGAGTGACCCAGCACCAGCGGGAGGATGGCCCAGGGATCAGACTTGGCGGACGCTGGCAAGCAGGACTCCCAGTGGCAGGGAGCAGATTGCGGGTTGTAACCTTAGTCGAGCACCCGTTTGTGTTCACAAGAGAAGTGGATGAGGAGGGCCAATGTCCGGCAGGGCAGCTGTGCCTTGACCCTCAAACCAACAACTCAGAAGTCCTCAACCAGCTGTTCAGAGAGCTGGAGCAAACCAACAGCAGCTCCCTGCCAACTGACATGCGGAAATGCTGCTACGGATACTGCATTGACCTGTTGGAGAAGTTAGCTGAGGACATGCACTTCGAGTTCGACCTTTACATTGTAGGCGATGGGAAGTACGGAGCATGGAAAGGGGGTCGATGGTCTGGGCTGGTGGGTGACCTGCTCAGTGGTGTGGCGGATATGGCTGTCACCAGCTTTAGCATCAACTCAGCTCGAAGCCGAGTGATAGACTTCACTAGCCCCTTTTTCTCCACCAGTTTGGGGATCCTGGTGCGAAGCAAGGACACAGCTGCACCCATTGGTGCCTTCATGTGGCCCCTTCACTGGTCCATGTGGGTGGGCATCTTTGTGGCACTGCATATTACAGCGCTTTTCATCACTCTATATGAGTGGAACAGTCCCTTCGGCATGACTCCACATGGACGCAATCGCATTAGGGTCTTCTCATACTCGTCTGCTCTTAACCTCTGCTACGCCATCCTGTTCGGCCGGACTGTCGCCAGTAAGACTCCAAAGTGCTGGACAGGCCGCTTCCTCATGAATCTTTGGGCCATATTTTGCCTCCTGGTGCTGTCAAGTTACACAGCCAACCTAGCAGCTGTCATGGTGGGGGAGAAGACCTTTGAGGAAGTGTCAGGAATTCATGATGTCAAGCTCCATCACCCATCCCTGGGGTTTCGCTTCGGCACAGTGCGTGAGAGCAGTGCTGAGGACTATGTGAAAAAGAGCTTCCCCGAGATGCACGAGTACATGAGGCGCTTCAACAAGCCCACCACTCCGGATGGAGTCTCTACACTCAAGACAGATCCCCCTCAGCTTGACGCCTTCATCATGGATAAAGCTTTGCTGGACTACGAGGTATCCATAGACGCAGACTGCAAACTCCTGACTGTAGGAAAACCGTTTGCTATTGAAGGTTACGGGATCGGTCTGCCCCAGAACTCCCCTCTCACACGCAACGTCTCCGAGTACGTCAGCCGCTACAAGTCTGACGGTTACATGGACATGCTTCACGACAAGTGGTATAAAGTGGTTCCCTGTGGCAAGAGGGTTTTTGCTGTGACAGAGaCTCTGCAGATGGGCATCCAGCATTTCTCTGGGCTGTTCGTGTTACTGTGTGTCGGGGTAGCAGGAGCTTTACTCACACTTCTGGGGGAACACGCTTTCTTCAGATTCATCCTGCCTCACCTCCGTCACCAGCAGAGGTTCAAATACTGGCTCCACACCAGCCAGaaaatccACCGTGCAATAAATATGGGTTGTGATGATGAAAGGAAGTCAGAGGCTGAGAGCAGTGACAGATGTCCCACCTTGTGCCTGTCAGAGAACTGTAATCTCCACCGCCTGCCGCCCTCGTCCTCTTCTCCGCCTTCCACCTCCTCCACGTCCACCACTACAACCAAGTGGAACAATCAGAGCGTCAAGGCTGGTCGAGAGGCCAAAGAGCAGAACAAGCGTGTCCACTTCAACCTGGAGACTCTCAACAGCTACCAGCTCCAAGCTCCGCCTCATGGGGCGGAAAGGGGGCGAAGAGGGTTGGTGGGAAGCCCACCTACCCAATTGTGTTCCAACGGTGGCCCGAATCCCAGTCTCAGCCTGGTGCTTTCACCCCTGACCTGCTCAGGACACTCAACGCCATGGGAAGAGGAGCTGCACGAGCTTCAGGGAAGGATCGAGGAGTTTCGTGGCCAGCTCAGGGCAGCTCTGGCTAGGCGAGCCGAGCTCCAGAGGACCCTAGTCAGACAGCGGCTCAGTCAGTCCCAAAACAGCTCCTCATATAATCCCAACACCAACACCCTGACCAAAGACATCAACAGGGGGAGGTGATGTTCGCTGAGTGTCGGCAGTGGATATAAGGGGATAAGGGACATCCTCTCATCTGAGAAGTCGTGCCGTGCTATTTTCTgccttcttctttttttcaatGACTGCTGGAGTGCTGCAGTGATGGATGAAACACTCTGTGATGGAGATTCGCCTTGTAATCCTGCAGTCTGGCTCATTTCCAGCTTGAGAGAAAGCATTtatctttgtgtgtatgtgtgtgtgtgcgcgtgtgtgtgtgtttaaagccaGACAAGTGGACAGAGAACAGACACTTAATGCACCATTCACTGCTGGCCAAGGTGAATATCTGCACCCACAGACGTCTGGCATGACAATTGCTTCATTTTGTAAATAAGTCAATGGGATTATTTAGAGGGATAAGTAACACTGGACCAGGTCTCAACCTCGGACCACCCATGGTCCACTCACTGACCGTCGGATTCACATTGCACACTAAAATCAGTTCTTAAATAAGaattagcaaatgttttacaacTTTCAGGATTTTCAggatttccttttcttttttatattcgACTTAATCAAGGtataaagaatgttttcagtTCAGGGTTTAGTTTGAGGCcatgtttacacctggtattaaagggatagtttccc

Function

symbol description
grin3ba Predicted to enable ligand-gated ion channel activity and signaling receptor activity. Predicted to contribute to NMDA glutamate receptor activity. Predicted to be involved in ionotropic glutamate receptor signaling pathway. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human GRIN3B (glutamate ionotropic receptor NMDA type subunit 3B).

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0006811 ion transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function
GO:0004972 NMDA glutamate receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-354 Predicted to enable ligand-gated ion channel activity and signaling receptor activity. Predicted to contribute to NMDA glutamate receptor activity. Predicted to be involved in ionotropic glutamate receptor signaling pathway. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human GRIN3B (glutamate ionotropic receptor NMDA type subunit 3B).

Ensembl:

ensembl_id ENSDARG00000005364

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030941 True 4090 mRNA 0.53 9 26060528 26156784

Neighbor

gene id symbol gene type direction distance location
XLOC_015468 CR392012.1 coding upstream 20922 26034175 ~ 26039606 (+)
XLOC_015467 slc7a14a coding upstream 69744 25860344 ~ 25990784 (+)
XLOC_015466 eif5a2 coding upstream 215191 25839193 ~ 25845337 (+)
XLOC_015465 tnika coding upstream 222542 25657958 ~ 25837986 (+)
XLOC_015464 pld1a coding upstream 428438 25560556 ~ 25632090 (+)
XLOC_015470 NA coding downstream 9794 26166578 ~ 26167419 (+)
XLOC_015471 plppr3a coding downstream 22312 26179096 ~ 26209425 (+)
XLOC_015472 palm1b coding downstream 80538 26237322 ~ 26284245 (+)
XLOC_015473 CR788230.1 coding downstream 129681 26286465 ~ 26287505 (+)
XLOC_015474 ptbp1a coding downstream 131517 26288301 ~ 26300619 (+)
XLOC_015461 NA non-coding upstream 922739 25130523 ~ 25137789 (+)
XLOC_015456 NA non-coding upstream 1132774 24912293 ~ 24927754 (+)
XLOC_015455 NA non-coding upstream 1153913 24903666 ~ 24906615 (+)
XLOC_015449 NA non-coding upstream 1339741 24716314 ~ 24720787 (+)
XLOC_015478 NA non-coding downstream 356824 26513608 ~ 26519549 (+)
XLOC_015479 NA non-coding downstream 435911 26592695 ~ 26595418 (+)
XLOC_015483 BX248497.1 non-coding downstream 510896 26667680 ~ 26672847 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_08618566_08669147 NA coding CI01000004 null 8618566 ~ 8669147 (+)