XLOC_015474 (ptbp1a)


Basic Information

Item Value
gene id XLOC_015474
gene name ptbp1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26288301 ~ 26300619 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030947
CCATTTTGTAAGGATATAAGAAATACTAGCAGGTCTACCTCCCGTCTACGACAACCTGTAGTTTTGTGTAGTGCCATGGACGGCCGTTTAGAGACTGATCTGTATCCTCTGGGATCCAGTTACGTCACTGAAATAGAcAGTGTCCATGATATAACAGTCGGCACAAAGAGGGGATCCGACGAACTCTTTTCCTCCTGCATATCTAACGGACCATATATAATGAGCTCTGGAGCCGCAAATGGGAATGACAGCAAGAAATTCAAAGGGGACATCAGGAGTCCGGGCATTCCTTCACGGGTCATTCATGTGCGCAAACTGCCAAATGACATAAATGAAGCTGAAGTCATTTCTTTGGGGCTTCCCTTTGGCAAAGTGACCAACCTTTTGATGCTGAAAGGAAAGAACCAGGCCTTCCTGGAGATGAACACAGAGGAGTCTGCACAGACCATGGTCAGCTACTACTCCTCCGTCACCCCTGTCATTCGCAACCATCCGATCTTCATGCAATATTCCAATCACAAGGAGCTGAAGACTGACAACTCGCCCAACCAAGTCAGAGCACAGGCTGCTCTGCAGGCGGTGAATGCGGTCCAGACAGGAGGCATGTCTTTGGCTGCTATTGATGGAGCAGGCATGGGGAGCCAGAGCCCTGTGCTGAGAGTTATTGTAGAAAATCTCTTCTATCCAGTCACTCTTGATGTCCTTCATCAGaTCTTTTCAAAGTTTGGCACCGTTTTGAAGATCATAACCTTTACCAAAAACAACCAGTTTCAAGCTCTGGTTCAATACTCAGACGGAATGACAGCTCAGCATGCAAAGCTGTCTTTAGATGGACAGAACATCTACAATGCCTGCTGTACCCTTCGCATCAGTTTCTCTAAGCTCACCAGCCTGAATGTTAAGTACAACAATGATAAGAGCAGAGACTACACTCGCCCCGACCTGCCAACAGGAGACAGTCAGCCCTCCTTTGATGCACAGACAATGGCAGCAGCCGCCTTGACTGCTCCTGGTATTATCTCTGCATCACCTTATGCTGGAGCTCATGGTTTCCCACAAGCATTTGCTATTCAGCAGGCAGCAGGTCTGTCTCTGCAGGGTATGCCTGCTGGGGCTCTTGCTTCACTCTCTGTTCCTGGTGCTGCGGCAGCCGCTGCTGCAGCAGCTGCTGCTGGACGCCTCGGTCTCTCTGGTCTCACTGCTGCAGGAAACAGTGTCCTGCTGGTCAGCAACCTTAACCCTGAGAGCGTTACGCCCCAATGCCTCTTTATTCTTTTCGGTGTCTACGGTGATGTCATGAGAGTAAAGATCCTGTTTAACAAAAAGGAGAACGCTTTGGTGCAGATGTCTGATGGAACCCAAGCCCAACTAGCCATGAGCCACTTGAATGGGCAGAAGCTGTATGGCAAGGCTTTGCGGGCGACTCTTTCCAAACACACCACGGTGCAGCTGCCGCGTGAAGGCCATGAGGATCAGGGCCTCACCAAGGATTACAGCAACTCTCCTCTTCACCGCTTTAAAAAGCCAGGTTCCAAGAACTACTCCAACATCTTTCCGCCTTCCTCAACTCTCCATCTCTCCAACATCCCTCCTTCTGTCACTGAGGATGATCTCCGAGGTTTGTTTCTGAGTTCAGGAGCTGTGGTTAAGGCCTTCAAATTTTTCCAGAAAGACCGTAAAATGGCACTCATCCAGCTGGCCTCTGTGGAAGAAGCAATTGAGTCGCTGATCAAGTTTCACAATCATGACCTGGGAGAAAACCATCACCTCAGAGTCTCCTTCTCTAAGTCCACAATCTGATGGAGGCGCTTTTGGTTTCAAGAAGGTGTAAGGACTGTCACTTTAGACCAAACTTTTAAGCCTTCCACAATTTATATCACTGTGGACAAATGTTTTCCACAACACACACTTCATCATTCCTTTTTATTAGATCTATATTCACATATCTATTTCTTTTTGTCATTCCACTTTGAACCAGTAGACAAGAGGAACTCGTCAACCCAAATGTGACTTGGGTTTTAATAGTACCTTTTTCCTCGACGGTTTGTCTCGTAATTTAGTTTATCTTTGGCACACATTGGTTTTGGATCATAGATGCTGCATAGTTTACACTTGTGCCTCTGCGGAAAGCCGCACTCTTTCAGGTTGCACTCAAAGCCTTGTTTCGTTTGTTTGAATCTGATCGGTCCCTGTTTGCCTTTCCACAACAAGCATTTGTGCCTTTACATTGTGCTTGAAGAATATCTTAATTGCCATCATAATTTCATGATGTTTTTGGATTCTTTTGCAAGGCCATTAACCtcaacatacaaaaaaaagctCTGGTGTTGCCAGGTAGTCTGTTTAAATTTGACTATTGAAAACACCAGAATGTTTTCCTGCGAAAGGCAGCAATTTGGTTATATACAGGCTTTAGTTTTGTACCTTGCTGTCACAGCTTATTTTGCATATAGttattctatatatataaatatgtggtTCTACTCTTTATCTACCGTGTGTAAGAGATATTCTATAATCTATATAGTTTCATtccatattgtttaaaaaaagaaaaaatatcgcACATTTCTATACTGTATAATCTGTTTGGGCATTGTCCCACTGCACTCTGTGCCTAGATGGTGATAGTCTGTTAAGTTTGGGTACAATTTCTATTTTTTCCACACTTCCCTATTGCCTTGCTTCTTATGGGTTTTTATCAATAATGAAACCTTGGAACCAAACCAGACTTCACAaccttttgatttttgtttttatagtaATTCTACGTGTGACAATGAATCagatttgtttttctattttctaGAGTTAACAAGTGTAGCTTGTAAACTAGGACCTCCCAGAGATGATTGATTTCGTTTGTTTCTTCTGTAAGGTCTTACGGTCACTTGCCTTTTTATGTTAAAGAAATTTAGCATTACAGAGTCTTAAGCTCCTGAGTGATACTTTTTGGTGAACCAAGACACCTGTGACAAGACTTTGGGCTGTTTTTGGCACTTCTTTATGTGGGAGGGggaggacattttaagacttttagtCTTTCCTCTGCATCCAGTTTCATGTTGACTGTAACATGAATTTCAATGTTCGGatatttcttttcagcttatttctGTAATTGATGCTAAAGAAATCTTTCCATGTCAGTTTCTTTTAGCAATCTAACAAAATGTTTTGCGGTTGGGTGGgtggtgtttttcttttttttttttattacagaagaGTAGCATGATGGACCAAAGCATCTTTATTGTTCTGCCAGACACTTTATGATCTTTCTTATTGAAGTGTATCATACTGtgcagcaatatttttttatgaacgACTTTGATTTCAGTGGGTAGTTTAGAGGGCTTATCTGTATATTATTGCCACTTTTGTTTACAAAGAGCAACAAgtccttaaaaaagaaaaaaatattacaaattctaAACATTGTGGGCTATTTTTGGTCCTGAAGTATGTGTATCATGATGACTTCTGTTGTCCGAGAACAGAACCTAAAACTAAAGTCTTAAAGTCGCGACAGCTCTTTTGTCTTATCctacttttttgtttttccagTATGGATGTAATGTTCAGCAACAGTGGGAGAGGActactgtatataattatttgtgttttgtacGAGTAATTGCAAATCAACAATTTCTGTCAAACATGTATATTTTGATAAGCTTACAGCAGACATTCAGCTCATTGTAGAGCCTTCCTTTTttattacaccatattaaagagaTTCCAACATGTCGTCTCTTGACAAGTAATTGCCCTCTTGTAAACATAACCTTCTTCTGATCTAGATGCTCATACTTTTTTATGTCTTCAATAAATCTTTCTTTTTCCTGCTTT
>TCONS_00030948
TTTAGAGACTGATCTGTATCCTCTGGGATCCAGTTACGTCACTGAAATAGAcAGTGTCCATGATATAACAGTCGGCACAAAGGTATGTAACTTAAACACAAGTGTTTGCCTTGCAAATGTGTGAAGTTGGTTTCCTTTTTGTTTACTGTGAGCATTAAGAAAGAATATTAGTCTGAGTCTAACCTATTTTTAATGGTATTCTACGTGTACTTCCTGAATTGCTGATACTAAGGAAACTGTTGTAAATGGCTGAGCCTGAAATTCTTGTTCCGCCTGCATCTCATCCAGCGACTTTAATTACTGTGGTCAAAGGGCACTTGCTGTTTAACCGATCACTGTGATAAGTGACCCAAAGGTGAAAAGTTGGCCAACACTCAAATCTCGTAATTGTTCTACTGCCAGATCAGAAATCGTCGTCTGGGTGTTTTTAGTTTCtgcttgtatatatttttttctctttctcaaaTAGTTACACCACAGTGTTATGTGGATACAAAATTGCTATCTTCACACTCATTTGGACGTGTTTGTAAATAGAGAC

Function

symbol description
ptbp1a Predicted to enable mRNA binding activity. Acts upstream of or within several processes, including intestinal epithelial structure maintenance; negative regulation of Notch signaling pathway; and positive regulation of cortical granule exocytosis by positive regulation of cytosolic calcium ion concentration. Predicted to be active in nucleus. Orthologous to human PTBP1 (polypyrimidine tract binding protein 1).

GO:

id name namespace
GO:0045746 negative regulation of Notch signaling pathway biological_process
GO:0006397 mRNA processing biological_process
GO:0006417 regulation of translation biological_process
GO:0060729 intestinal epithelial structure maintenance biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:0060472 positive regulation of cortical granule exocytosis by positive regulation of cytosolic calcium ion concentration biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0048025 negative regulation of mRNA splicing, via spliceosome biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-492 Predicted to enable mRNA binding activity. Acts upstream of or within several processes, including intestinal epithelial structure maintenance; negative regulation of Notch signaling pathway; and positive regulation of cortical granule exocytosis by positive regulation of cytosolic calcium ion concentration. Predicted to be active in nucleus. Orthologous to human PTBP1 (polypyrimidine tract binding protein 1).

Ensembl:

ensembl_id ENSDARG00000019362

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030947 False 3855 mRNA 0.42 16 26288301 26300619
TCONS_00030948 True 541 lncRNA 0.38 2 26289302 26290690

Neighbor

gene id symbol gene type direction distance location
XLOC_015473 CR788230.1 coding upstream 796 26286465 ~ 26287505 (+)
XLOC_015472 palm1b coding upstream 4056 26237322 ~ 26284245 (+)
XLOC_015471 plppr3a coding upstream 78876 26179096 ~ 26209425 (+)
XLOC_015470 NA coding upstream 120882 26166578 ~ 26167419 (+)
XLOC_015469 grin3ba coding upstream 131517 26060528 ~ 26156784 (+)
XLOC_015475 efna2a coding downstream 3008 26303627 ~ 26444503 (+)
XLOC_015476 hectd3 coding downstream 179057 26479676 ~ 26495044 (+)
XLOC_015477 rps8a coding downstream 197827 26498446 ~ 26501900 (+)
XLOC_015478 NA coding downstream 212989 26513608 ~ 26519549 (+)
XLOC_015479 NA coding downstream 292076 26592695 ~ 26595418 (+)
XLOC_015468 CR392012.1 non-coding upstream 248695 26034175 ~ 26039606 (+)
XLOC_015461 NA non-coding upstream 1150512 25130523 ~ 25137789 (+)
XLOC_015456 NA non-coding upstream 1360547 24912293 ~ 24927754 (+)
XLOC_015483 BX248497.1 non-coding downstream 367061 26667680 ~ 26672847 (+)
XLOC_015485 NA non-coding downstream 420449 26721068 ~ 26742206 (+)
XLOC_015486 BX511023.1 non-coding downstream 699923 27000542 ~ 27010345 (+)

Expression


Co-expression Network