XLOC_015475 (efna2a)


Basic Information

Item Value
gene id XLOC_015475
gene name efna2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26303627 ~ 26444503 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030949
GCGAGAGTCAGATGCTCCAGAAAGCCCGCATCATCTAGTCGATCGACGCTGAATATTTagcaattctttaaaaaaaacaacccaaACAGTGCTCAAAGGCAGAAATGACCAAGGCAGTATGGGGCAAAATTGCCTTTGTTCCTCCAGGACAGGAAGGACTCGTGCAAGCGGCTTGAGATGTGCGTAGGATCTCTGCTTTTTCACCCGGAGCGAGACACAAACAACACGATTCCGACAACAACTATTGTAGCAGACAACTTGTGCGATTAAAGATGGAGCTCTGAACAACCGTAAATCAGAAAGGCGTGTGTTACGGACGGGGACGTGTTTCGTGTGTTTCTCGTGCAGACCACATGGGATAGAGGTCTCTGGAAGTTGCACCGCTGCAAACCGGGAGCATCATTGTCGGAGACGGGCATCGCACTGTCCCGCGATCAGATGATGGACGCATTTTTGACACAGCTCTAAAGAAAATTGACCCCGGAGCCCTGTTGCCACATTAGAAACAACTGTGATGGATTTCCCCCTAAAAACAATCAACTGTGTGTCGATTCTGAAGTGAGCGAGAAAGTGATGCTGCTCTGTCGGTCAAAGGGAATGAAAATCACTCTGGATTATAAGTCTTGTTATGATGCTCCAAACTGCGTGTGTACATTCGCTCAAGCAGGTATTTGAAAAGTTGCCTCTGAAATAAGCGCCCGAAAATCTTCGTTTGGAGGTGAAGACTTGTAAAACAACTCAAATGGAGTTGTCTCTGGTGGTTTTTACGGTTGTGTGTTGGGTCTCCGTATGGTCGGACGACAGGATCATCTCAGACAGACATGCGGTCTACTGGAACAGCTCAAACTCCAGGTTCTGGCAGGGCGAATATACGGTGGCTGTGAGCATCAACGACTACCTGGACGTGTACTGTCCGTATTATGAGAGCCCGCAGCCGCACAGTCGCATGGAGCGCTACATCCTCTTCATGGTCAACCATGATGGTTACCTGACCTGTGAGCACCGCATGAGGGGCTTCAAGCGCTGGGAGTGCAATCGGCCCCAGAGTCCTGACGGACCCCTGCGCTTCTCGGAGAAGTTTCAGCTCTTCACCCCCTTCTCGCTTGGCTTTGAGTTCCGGCCTGGACATGAATATTATTACATCTCCTCTCCTCATCCCAACCACGCTGGCAAACCATGTTTAAAGTTGAAGGTGTACGTGAAGCCTACAAGTTCGGGCTACGAGTCTCCAGAGCCCTTCCTGACTGATCAGAGCCAGCGCTGCGGGGCGGACGGCCCGTGCCTTGCTGTGCTGATGCTGCTGCTGGTGTTTCTGCTGGCCGGCGTTTAGGAAGCTCCTCCAGACTGTCTGCCCTCTCCCTACATCTATACTCCCTCAGGGAAGCCCTCTCTCATCCAGACCCCCAGACCATAGGCTACTGCGCcgtcatcctttttttttttgtaaccgaACAAGCTCCTCGCAGACCAGTCGAGGACGGAGACGTTCGCGCTGCTTTTGCAGTTTTGTGGAATGTGACCTTTTATATATGCTGTCATGTAATCGAGGCTTGTATTCATGTGCCATTTCGTCACGTTTCAGGGCGTCGCGGTTTAcaaaagatttcagacactcATTTGGATTGTCCTATCGGCCCCCCACATCATTTATAAACCACATTCAGCCCTAGAATTAAAAGGGGATTTCCCTCTCAACACCAAAGGACTCTCTTCagagttttagttttattttttggttgaaGGGAGAGAAGAAATGTGTTTTGTGGTAGCCAGCAGCTAGGAACTTAGTGTTAGACATTCACATGCATGTGAAACACTGTGAAACTGATCTTCTTACAATagtaacaatatatttttattagcaaaaaaATCAACAGAAGTAGACCTTTTAGCCACTCTTCTGGTGTAAGGCTCAGCTGGTGGATCAGACGCAGCCAAATTCAGAGCTCACTGCTGGACGTCACCTCAAAAACTGTGGCCGGATGAGGACTTTGAATCTCTGAAATGAGAATAAATGCTTTGGTGCAAACCCAAATGccgcttaaaaataaaaaaactctgcattactatttttttttccagctccGCGGGACAAACAAGCAATGAGTGTTGCAAGAGTAAAACGATCTGCGAGGATCAGGGACTAGCCACTTTTAATTCACCGGCGCACGCACTGCGGGCATGGACGAAAAGGAAATggatttttttgtattctatttcATGTTATTTTTGTAGCATTTAAAAGCAACATTAATTATTCATGTGATATGAGGAACGGTTTTAGCGTCTTGAGTGGcgatacagtgtgtgtgtgtgtgcgtgtgtgtgtgagtcagcAGCAGGACGCTTTCACTCTCTCACTCTTATACTGTTGTTATTGTGGTCTTGTCAAACTGTATTCAGTATTTAAAGAGACAGAAAGCATTTCTTTCCATCTGATTTGATTGTGTCCTCTTTTTCATGTGACGTTTTGTACAGCCAACATGTTCTGTCGAACTAAAGAAACATGCTgaaatggaaaaacaaaaaataaagcgtTCTTTTTTTGTCTACGAGGTGCACTCATGTGATAGAAGGATGCATTGTTGACAAGTGACATTTTGGCTTGGCTTTGTATGGCATGGATGTAAagctatattaaatattttacaata

Function

symbol description
efna2a Predicted to enable ephrin receptor binding activity. Predicted to be involved in axon guidance; ephrin receptor signaling pathway; and osteoclast differentiation. Predicted to act upstream of or within cell differentiation and nervous system development. Predicted to be located in membrane. Predicted to be anchored component of membrane. Predicted to be active in plasma membrane. Is expressed in brain; hindbrain neural keel; midbrain neural rod; and midbrain neural tube. Orthologous to human EFNA2 (ephrin A2).

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0007399 nervous system development biological_process
GO:0007411 axon guidance biological_process
GO:0030316 osteoclast differentiation biological_process
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0046875 ephrin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-66 Predicted to enable ephrin receptor binding activity. Predicted to be involved in axon guidance; ephrin receptor signaling pathway; and osteoclast differentiation. Predicted to act upstream of or within cell differentiation and nervous system development. Predicted to be located in membrane. Predicted to be anchored component of membrane. Predicted to be active in plasma membrane. Is expressed in brain; hindbrain neural keel; midbrain neural rod; and midbrain neural tube. Orthologous to human EFNA2 (ephrin A2).

Ensembl:

ensembl_id ENSDARG00000031372

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030949 True 2654 mRNA 0.46 4 26303627 26444503

Neighbor

gene id symbol gene type direction distance location
XLOC_015474 ptbp1a coding upstream 3008 26288301 ~ 26300619 (+)
XLOC_015473 CR788230.1 coding upstream 16122 26286465 ~ 26287505 (+)
XLOC_015472 palm1b coding upstream 19382 26237322 ~ 26284245 (+)
XLOC_015471 plppr3a coding upstream 94202 26179096 ~ 26209425 (+)
XLOC_015470 NA coding upstream 136208 26166578 ~ 26167419 (+)
XLOC_015476 hectd3 coding downstream 35173 26479676 ~ 26495044 (+)
XLOC_015477 rps8a coding downstream 53943 26498446 ~ 26501900 (+)
XLOC_015478 NA coding downstream 69105 26513608 ~ 26519549 (+)
XLOC_015479 NA coding downstream 148192 26592695 ~ 26595418 (+)
XLOC_015480 lrrc42 coding downstream 160270 26604773 ~ 26611033 (+)
XLOC_015468 CR392012.1 non-coding upstream 264021 26034175 ~ 26039606 (+)
XLOC_015461 NA non-coding upstream 1165838 25130523 ~ 25137789 (+)
XLOC_015456 NA non-coding upstream 1375873 24912293 ~ 24927754 (+)
XLOC_015483 BX248497.1 non-coding downstream 223177 26667680 ~ 26672847 (+)
XLOC_015485 NA non-coding downstream 276565 26721068 ~ 26742206 (+)
XLOC_015486 BX511023.1 non-coding downstream 556039 27000542 ~ 27010345 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_08806791_08812203 NA coding CI01000004 null 8806791 ~ 8812562 (+)