RNA id: TCONS_00030949


Basic Information

Item Value
RNA id TCONS_00030949
length 2654
RNA type mRNA
GC content 0.46
exon number 4
gene id XLOC_015475
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26303627 ~ 26444503 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGAGAGTCAGATGCTCCAGAAAGCCCGCATCATCTAGTCGATCGACGCTGAATATTTagcaattctttaaaaaaaacaacccaaACAGTGCTCAAAGGCAGAAATGACCAAGGCAGTATGGGGCAAAATTGCCTTTGTTCCTCCAGGACAGGAAGGACTCGTGCAAGCGGCTTGAGATGTGCGTAGGATCTCTGCTTTTTCACCCGGAGCGAGACACAAACAACACGATTCCGACAACAACTATTGTAGCAGACAACTTGTGCGATTAAAGATGGAGCTCTGAACAACCGTAAATCAGAAAGGCGTGTGTTACGGACGGGGACGTGTTTCGTGTGTTTCTCGTGCAGACCACATGGGATAGAGGTCTCTGGAAGTTGCACCGCTGCAAACCGGGAGCATCATTGTCGGAGACGGGCATCGCACTGTCCCGCGATCAGATGATGGACGCATTTTTGACACAGCTCTAAAGAAAATTGACCCCGGAGCCCTGTTGCCACATTAGAAACAACTGTGATGGATTTCCCCCTAAAAACAATCAACTGTGTGTCGATTCTGAAGTGAGCGAGAAAGTGATGCTGCTCTGTCGGTCAAAGGGAATGAAAATCACTCTGGATTATAAGTCTTGTTATGATGCTCCAAACTGCGTGTGTACATTCGCTCAAGCAGGTATTTGAAAAGTTGCCTCTGAAATAAGCGCCCGAAAATCTTCGTTTGGAGGTGAAGACTTGTAAAACAACTCAAATGGAGTTGTCTCTGGTGGTTTTTACGGTTGTGTGTTGGGTCTCCGTATGGTCGGACGACAGGATCATCTCAGACAGACATGCGGTCTACTGGAACAGCTCAAACTCCAGGTTCTGGCAGGGCGAATATACGGTGGCTGTGAGCATCAACGACTACCTGGACGTGTACTGTCCGTATTATGAGAGCCCGCAGCCGCACAGTCGCATGGAGCGCTACATCCTCTTCATGGTCAACCATGATGGTTACCTGACCTGTGAGCACCGCATGAGGGGCTTCAAGCGCTGGGAGTGCAATCGGCCCCAGAGTCCTGACGGACCCCTGCGCTTCTCGGAGAAGTTTCAGCTCTTCACCCCCTTCTCGCTTGGCTTTGAGTTCCGGCCTGGACATGAATATTATTACATCTCCTCTCCTCATCCCAACCACGCTGGCAAACCATGTTTAAAGTTGAAGGTGTACGTGAAGCCTACAAGTTCGGGCTACGAGTCTCCAGAGCCCTTCCTGACTGATCAGAGCCAGCGCTGCGGGGCGGACGGCCCGTGCCTTGCTGTGCTGATGCTGCTGCTGGTGTTTCTGCTGGCCGGCGTTTAGGAAGCTCCTCCAGACTGTCTGCCCTCTCCCTACATCTATACTCCCTCAGGGAAGCCCTCTCTCATCCAGACCCCCAGACCATAGGCTACTGCGCcgtcatcctttttttttttgtaaccgaACAAGCTCCTCGCAGACCAGTCGAGGACGGAGACGTTCGCGCTGCTTTTGCAGTTTTGTGGAATGTGACCTTTTATATATGCTGTCATGTAATCGAGGCTTGTATTCATGTGCCATTTCGTCACGTTTCAGGGCGTCGCGGTTTAcaaaagatttcagacactcATTTGGATTGTCCTATCGGCCCCCCACATCATTTATAAACCACATTCAGCCCTAGAATTAAAAGGGGATTTCCCTCTCAACACCAAAGGACTCTCTTCagagttttagttttattttttggttgaaGGGAGAGAAGAAATGTGTTTTGTGGTAGCCAGCAGCTAGGAACTTAGTGTTAGACATTCACATGCATGTGAAACACTGTGAAACTGATCTTCTTACAATagtaacaatatatttttattagcaaaaaaATCAACAGAAGTAGACCTTTTAGCCACTCTTCTGGTGTAAGGCTCAGCTGGTGGATCAGACGCAGCCAAATTCAGAGCTCACTGCTGGACGTCACCTCAAAAACTGTGGCCGGATGAGGACTTTGAATCTCTGAAATGAGAATAAATGCTTTGGTGCAAACCCAAATGccgcttaaaaataaaaaaactctgcattactatttttttttccagctccGCGGGACAAACAAGCAATGAGTGTTGCAAGAGTAAAACGATCTGCGAGGATCAGGGACTAGCCACTTTTAATTCACCGGCGCACGCACTGCGGGCATGGACGAAAAGGAAATggatttttttgtattctatttcATGTTATTTTTGTAGCATTTAAAAGCAACATTAATTATTCATGTGATATGAGGAACGGTTTTAGCGTCTTGAGTGGcgatacagtgtgtgtgtgtgtgcgtgtgtgtgtgagtcagcAGCAGGACGCTTTCACTCTCTCACTCTTATACTGTTGTTATTGTGGTCTTGTCAAACTGTATTCAGTATTTAAAGAGACAGAAAGCATTTCTTTCCATCTGATTTGATTGTGTCCTCTTTTTCATGTGACGTTTTGTACAGCCAACATGTTCTGTCGAACTAAAGAAACATGCTgaaatggaaaaacaaaaaataaagcgtTCTTTTTTTGTCTACGAGGTGCACTCATGTGATAGAAGGATGCATTGTTGACAAGTGACATTTTGGCTTGGCTTTGTATGGCATGGATGTAAagctatattaaatattttacaata

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0007399 nervous system development biological_process
GO:0007411 axon guidance biological_process
GO:0030316 osteoclast differentiation biological_process
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0046875 ephrin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-66 Predicted to enable ephrin receptor binding activity. Predicted to be involved in axon guidance; ephrin receptor signaling pathway; and osteoclast differentiation. Predicted to act upstream of or within cell differentiation and nervous system development. Predicted to be located in membrane. Predicted to be anchored component of membrane. Predicted to be active in plasma membrane. Is expressed in brain; hindbrain neural keel; midbrain neural rod; and midbrain neural tube. Orthologous to human EFNA2 (ephrin A2).

Ensembl:

ensembl_id ENSDART00000040278

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030948 lncRNA upstream 12937 26289302 ~ 26290690 (+) True XLOC_015474
TCONS_00033544 lncRNA upstream 136208 26166578 ~ 26167419 (+) True XLOC_015470
TCONS_00030930 lncRNA upstream 466795 25834095 ~ 25836832 (+) True XLOC_015465
TCONS_00030924 lncRNA upstream 921286 25315658 ~ 25382341 (+) False XLOC_015463
TCONS_00030918 lncRNA upstream 1165838 25130523 ~ 25137789 (+) True XLOC_015461
TCONS_00030952 lncRNA downstream 38394 26482897 ~ 26483391 (+) False XLOC_015476
TCONS_00030953 lncRNA downstream 47256 26491759 ~ 26494145 (+) False XLOC_015476
TCONS_00030954 lncRNA downstream 49797 26494300 ~ 26495044 (+) True XLOC_015476
TCONS_00030956 lncRNA downstream 54028 26498531 ~ 26501306 (+) False XLOC_015477
TCONS_00033545 lncRNA downstream 54028 26498531 ~ 26501647 (+) False XLOC_015477
TCONS_00030947 mRNA upstream 3008 26288301 ~ 26300619 (+) False XLOC_015474
TCONS_00030945 mRNA upstream 19382 26240631 ~ 26284245 (+) True XLOC_015472
TCONS_00030943 mRNA upstream 19417 26237322 ~ 26284210 (+) False XLOC_015472
TCONS_00030944 mRNA upstream 20654 26240339 ~ 26282973 (+) False XLOC_015472
TCONS_00030942 mRNA upstream 94202 26179096 ~ 26209425 (+) True XLOC_015471
TCONS_00030950 mRNA downstream 35173 26479676 ~ 26495042 (+) False XLOC_015476
TCONS_00030951 mRNA downstream 35173 26479676 ~ 26495044 (+) False XLOC_015476
TCONS_00030955 mRNA downstream 53943 26498446 ~ 26501868 (+) False XLOC_015477
TCONS_00030964 mRNA downstream 160270 26604773 ~ 26611033 (+) True XLOC_015480
TCONS_00030965 mRNA downstream 202969 26647472 ~ 26653148 (+) False XLOC_015481
TCONS_00030946 other upstream 16122 26286465 ~ 26287505 (+) True XLOC_015473
TCONS_00030940 other upstream 264021 26034175 ~ 26039606 (+) True XLOC_015468
TCONS_00030908 other upstream 1457628 24842587 ~ 24845999 (+) True XLOC_015452
TCONS_00030897 other upstream 1762862 24540047 ~ 24540765 (+) False XLOC_015445
TCONS_00030957 other downstream 54031 26498534 ~ 26501294 (+) False XLOC_015477
TCONS_00030958 other downstream 54058 26498561 ~ 26501275 (+) False XLOC_015477
TCONS_00030959 other downstream 54059 26498562 ~ 26501305 (+) False XLOC_015477
TCONS_00030960 other downstream 55146 26499649 ~ 26499754 (+) False XLOC_015477
TCONS_00030962 other downstream 56530 26501033 ~ 26501103 (+) False XLOC_015477

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_08806791_08812203.mRNA True 821 mRNA 0.46 3 CI01000004 8806791 ~ 8812562 (+)