XLOC_015481 (ttpa)


Basic Information

Item Value
gene id XLOC_015481
gene name ttpa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26647472 ~ 26653148 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030965
TTTCCTGCCCCTTTTTACGTAAGACTGGACTGCCGCTCTGAGAACAACATGACACTGGACCGCCCGTCGCAGATATGAAGTCCGAAGAAGTAGACGAGACTGAAGAATTAAACAATTTACCTGTTGATTCCTCCCGGATTGCACCATATTTGTCAGAGTTGAAAGAAAAAGCAGAGGCAGAATTGCGCATTCGAGACTTGGACTTGTCGAAAACTTTTTTGATACGGTTTTTGCAGGCGAGAGACTTTGATGTGGCGCTGGCGCTCAAGCTGTTGATTAACTATCATAAATGGAGACAAGAATGTCCAGAAATAACAGCCGATCTGCGTCCCTCATCCGTCATTGGACTTCTCCAAAACAACTACCATGGAGTTTTGAGATCGAGAGATGATGCTGGAAGTCGAGTTTTAATCTATCGGATTGgtaaatggaACCCCAAAGAGTTCACAGCCTATGAGGTTTTTCGTGTCAGCCTCATTACGTCAGAGCTGATAGTTCAAGAATGGGAGACGCAAAGAAATGGACTCAAAGCGATTTTTGATCTCCAAGATTGGTGTTTTGCTCATGCTCTGCAAATAAATCCTTCTTTGGCAAAAAAGATATCCTCTGTTCTTACGGATTCCTTTCCATTGAAAGTGCGTGGCATCCACTTGATAAACGAGCCAATTTTTTTCCGTCCTGTCTTTGCTATGATCCGACCATTTCTTCCAGACAAAATCAAACAACGGATTCATATGCATGGCTGTTCATATGCCCGAAGTCTCTGCAATTACTTTCCAAAGGCAGTACTCCCTCCTGTGTATGGAGGAACTGGACCCAGCGTAGATGAAGTGTGTCAAGAGTGGACCGAGTACATCATGCAGTCTGAAGACTATCTGCACAGGCTCTCTGTTGACTTAGGTGGAGAAGGAGGACATGCTTCTCAGTCATAAAGTGAAGGTGTGAACCATCACCTCATCATTTCAACATATgttgaacatttttttatttgggttttTTCATATTGGACATGACTGAATGGTGCAGCTTTTTTAAATTGTCTGTGTGATTAGCTTTTAAGATATTCCAAACTGGAAGAAATAACATTCCTGTTTACTTAGTTTGACTGAGTATATATATTTGGATAATAATGTGATGTATTGAAGCACTTGATTTGCTTCTGAAGATGTGATCTAGCATCAGATATCAAATATCAGATGTTTGTTACCTTTAGTATAAGGTTTCCACAGTCACTTGTAAATAGCAAAAGAACAATGTAATAATATTGTACATGACTGAAATAATAAGTGCCTTCTGATCTGTGATGGTGTTTATTGGCATATTTTTATCAAACTGGACATAACTCAGGATGTTACAGGAGTTAATCAAGGATTAACTGTTTGTTACACCTCAGCTGTTAAAAATCAATGGATCTGTATTGTAACAATAAATTGCAGCTATTGGTAACCTTTGTTGTCTTTTCAGTCTACCAAGTGGGATTGTAAAGTGGCACTTTGCTCTATTGCCTTCTGCTCCGATTCTTAAACAAACAGACCAATGACCTTACTGGAGCTCTTCATGTTTACATGGTTTCTATAAATGTGACTTTCTGAAACCCTGTTTATAATGCTGTTTGTTCAATTTGTTGCACCCTTATGTCAAAATATGTTTCACATGGCAGAAAAACTACTAAATAATCTACGCTAACATAATTGAATATAATCGTGTTGACTCGGTGTTATACTGTGAATAATTATCTCCTTTGTATTATACTTTATCACAATGATACAAATATATTCGCAGACACATTATTTCACAATGTGCTAAACTTAATTAAAGCTGAAACTGGACACTTTCA
>TCONS_00030966
TTCCTGCCCCTTTTTACGTAAGACTGGACTGCCGCTCTGAGAACAACATGACACTGGACCGCCCGTCGCAGATATGAAGTCCGAAGAAGTAGACGAGACTGAAGAATTAAACAATTTACCTGTTGATTCCTCCCGGATTGCACCATATTTGTCAGAGTTGAAAGAAAAAGCAGAGGCAGAATTGCGCATTCGAGACTTGGACTTGTCGAAAACTTTTTTGATACGGTTTTTGCAGGCGAGAGACTTTGATGTGGCGCTGGCGCTCAAGCTGTTGATTAACTATCATAAATGGAGACAAGAATGTCCAGAAATAACAGCCGATCTGCGTCCCTCATCCGTCATTGGACTTCTCCAAAACAACTACCATGGAGTTTTGAGATCGAGAGATGATGCTGGAAGTCGAGTTTTAATCTATCGGATTGGCAGGTACATACACAAGCAATAATTCAAAACTTTTCTCTGCCcttaaaatattgaatattacCATTTTCCAAActctttttttaaggtaaatggaACCCCAAAGAGTTCACAGCCTATGAGGTTTTTCGTGTCAGCCTCATTACGTCAGAGCTGATAGTTCAAGAATGGGAGACGCAAAGAAATGGACTCAAAGCGATTTTTGATCTCCAAGATTGGTGTTTTGCTCATGCTCTGCAAATAAATCCTTCTTTGGCAAAAAAGATATCCTCTGTTCTTACGGATTCCTTTCCATTGAAAGTGCGTGGCATCCACTTGATAAACGAGCCAATTTTTTTCCGTCCTGTCTTTGCTATGATCCGACCATTTCTTCCAGACAAAATCAAACAACGGATTCATATGCATGGCTGTTCATATGCCCGAAGTCTCTGCAATTACTTTCCAAAGGCAGTACTCCCTCCTGTGTATGGAGGAACTGGACCCAGCGTAGATGAAGTGTGTCAAGAGTGGACCGAGTACATCATGCAGTCTGAAGACTATCTGCACAGGCTCTCTGTTGACTTAGGTGGAGAAGGAGGACATGCTTCTCAGTCATAAAGTGAAGGTGTGAACCATCACCTCATCA
>TCONS_00030967
ATGAAGTCCGAAGAAGTAGACGAGACTGAAGAATTAAACAATTTACCTGTTGATTCCTCCCGGATTGCACCATATTTGTCAGAGTTGAAAGAAAAAGCAGAGGCAGAATTGCGCATTCGAGACTTGGACTTGTCGAAAACTTTTTTGATACGGTTTTTGCAGGCGAGAGACTTTGATGTGGCGCTGGCGCTCAAGCTGTTGATTAACTATCATAAATGGAGACAAGAATGTCCAGAAATAACAGCCGATCTGCGTCCCTCATCCGTCATTGGACTTCTCCAAAACAACTACCATGGAGTTTTGAGATCGAGAGATGATGCTGGAAGTCGAGTTTTAATCTATCGGATTGGCAGG

Function

symbol description
ttpa Predicted to enable lipid transfer activity; phosphatidylinositol bisphosphate binding activity; and vitamin E binding activity. Acts upstream of or within central nervous system development and chordate embryonic development. Predicted to be active in late endosome. Is expressed in several structures, including eye; immature eye; liver; neural tube; and tail bud. Human ortholog(s) of this gene implicated in familial isolated deficiency of vitamin E. Orthologous to human TTPA (alpha tocopherol transfer protein).

GO:

id name namespace
GO:0043009 chordate embryonic development biological_process
GO:0051180 vitamin transport biological_process
GO:0007417 central nervous system development biological_process
GO:0042360 vitamin E metabolic process biological_process
GO:0005770 late endosome cellular_component
GO:0008431 vitamin E binding molecular_function
GO:0120013 lipid transfer activity molecular_function
GO:1902936 phosphatidylinositol bisphosphate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4631 Predicted to enable lipid transfer activity; phosphatidylinositol bisphosphate binding activity; and vitamin E binding activity. Acts upstream of or within central nervous system development and chordate embryonic development. Predicted to be active in late endosome. Is expressed in several structures, including eye; immature eye; liver; neural tube; and tail bud. Human ortholog(s) of this gene implicated in familial isolated deficiency of vitamin E. Orthologous to human TTPA (alpha tocopherol transfer protein).

Ensembl:

ensembl_id ENSDARG00000027584

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030965 False 1837 mRNA 0.38 5 26647472 26653148
TCONS_00030966 False 1045 lncRNA 0.43 4 26647473 26652271
TCONS_00030967 True 354 mRNA 0.43 2 26647546 26649283

Neighbor

gene id symbol gene type direction distance location
XLOC_015480 lrrc42 coding upstream 36439 26604773 ~ 26611033 (+)
XLOC_015479 NA coding upstream 52054 26592695 ~ 26595418 (+)
XLOC_015478 NA coding upstream 127923 26513608 ~ 26519549 (+)
XLOC_015477 rps8a coding upstream 145572 26498446 ~ 26501900 (+)
XLOC_015476 hectd3 coding upstream 152428 26479676 ~ 26495044 (+)
XLOC_015482 asph coding downstream 2596 26655744 ~ 26682182 (+)
XLOC_015483 BX248497.1 coding downstream 14532 26667680 ~ 26672847 (+)
XLOC_015484 impa1 coding downstream 29765 26682913 ~ 26688908 (+)
XLOC_015485 NA coding downstream 67920 26721068 ~ 26742206 (+)
XLOC_015486 BX511023.1 coding downstream 347394 27000542 ~ 27010345 (+)
XLOC_015473 CR788230.1 non-coding upstream 359967 26286465 ~ 26287505 (+)
XLOC_015470 NA non-coding upstream 480053 26166578 ~ 26167419 (+)
XLOC_015468 CR392012.1 non-coding upstream 607866 26034175 ~ 26039606 (+)
XLOC_015488 BX649522.3 non-coding downstream 565001 27218149 ~ 27242711 (+)
XLOC_015489 BX649522.1 non-coding downstream 667866 27321014 ~ 27324181 (+)

Expression


Co-expression Network