XLOC_015482 (asph)


Basic Information

Item Value
gene id XLOC_015482
gene name asph
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26655744 ~ 26682182 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030968
caccTCTATTTTGGACATCCTATTGAATTATAtaagttatttaattgtttaaacttagTTTATTTACTATTTTCTGCAATGTGTTTATACTAAAGGATGGAAGCTTGGATCTCATTTCCAACTTTACAATGCAACACTTTTGCAGACCACAGCCTACTTACCTATATAGGTCACCTACATACGGAGATATTTCGCCGGATATACGCAACTATACAAGTTATGataatgtttaattgttttaaattcattcaCAGCACAGTTATATAGAATTGATCTCGCGATAAGTACAGCCTTCCATCTTGCCACGTTCCagtgctgacaaaaaaaaaaaagcaaacacaacTGGGCGGTCTTAGCTCGCAGGTATCCACACGATTGAATAAGTCATCAGGCACTGCTCGACGATTGGGTGACATTTCCCCTTCTCCCCGCCCTTAGCAGTTTTGACTGAACGCCATTGGTCAAACGCTCAGTCACTCAAAAGGGGGACGGGTTGCTATGGGCCTCGGCGTTTGAAGGCATAGGGATTTGATTTTGCAGGGCATCAGTACCAGAACTGAGGCTGGAATTTCAGTCAGTTTATTTGCTGCAGACAGAGAAACGTCGAAGAGCTACCACTTAAAATGGCCAAGAAAAACGTAAAAGGACCAGTTAAGAAAGAGGCTAAGCCACAGCAGGCACACAAGAATGGGAAGAAGGCAGAGGTTGGAGGAGGAACCTCTTTCTTCACCTGGTTCATGGTTTTGGCTCTGCTGGGTGTCTGGACCTCTGTAGCTGTGGTGTATTTTGACCTTGTTGACTATCAAGGGGTAATCGGTAAACTTGTATCCTATGATGCTGATGGCGATGGAGACTTTGACGTGGAAGATGCTAAAGTACTACTAGGACTGAAAGATAAGCTCACCGTTGAGACCAGAGAAACTGTCCAGTCTGCCACCCCTGAACCTGTGGAAGAAGCTCTAGATGCTATTGTGGAAGAAGAGATTCAAGCCTACGAAGCTGAAGAAGCAGCTCAGTCACCACCAGAAGCTGTGGAGGAGGAGCCTGTTGCTGAGGAGGAAGAACCACTGGCAGTAGATGAAGAGCCTGTTGTTGCAGAAGAGGAAGTAACTGAAGAGGAACCAGAGGTTGAAGAAGACCTAGAAGTTCCTGAGGAGGAACCTGAAGTTATCGAGGAAGAGCCAGAGCTCCCAGTTGAGAAACAGACTTTTGAGGAAGCAGTGGAAGAACTTGCAACTGAAGAAGAGGTCGTAGCAGTTGAAGAAGCAGTAGAGGAAGTAGCTCCTGTGGAAGAAGCAATAGAGGAAGAGGCTGCTCCGGTGGAAGAAGCTGCTGAGGAAGAGGCTGCACCAGTGGAAGAGCCAGTAGAAGTGTTTGAAGAAGTTGTACCAGTGGAAGAAGCAGTTGAGTTGGAGGAAGAGGCTGCCCCAGAAGAAAAAGAATCTGTGGAGGAAGCTGCACCGGTGGAGGAAGCTTTACCAGCAGAAGAAACTGCACCAGTAGAAGAAGCAGTTGAGGTTGAAGAAGAAGCTGTAGAGGAGGTTGTAGAAGCAGAAGAAGCTGTTGAGGAGCTTGAATCGGTTGATGAAGTTGAGGAAAATTTACCAGTAGAAGAACCAGTGGAGGATCTTGAACCGGTAGAAGAACCAGTGGAGGAAACTGAACAAGTAGAAGAAGCATTTGAGGAACCTGAACAGGCAGAGGAACCAGTAGAAGAAATAGTAGAAATACCTGAAGAGGAAACCGAGGAGTCAGTCCCTACAGAAGAAACTGTAACGAAAGAGGATGTTACAGAGGAAGTGGATGAGCCTGTTCAGGAAGAAGAGGAAGAACAAGACTTTACAGAGGAGGAAGCAGAGGAGGAAGTTGAGGTTGAGGCAGAAAATATAGAAGAAGAGGAATATGAAGCTGCAGAGGAAGAGCAGAATGAGGAGGACATTCCAGAGGATATTAACCAAACAGAAGAAGAAATTGAAGTAGAGCACAcagAAACATAA
>TCONS_00030969
GGGCATCAGTACCAGAACTGAGGCTGGAATTTCAGTCAGTTTATTTGCTGCAGACAGAGAAACGTCGAAGAGCTACCACTTAAAATGGCCAAGAAAAACGTAAAAGGACCAGTTAAGAAAGAGGCTAAGCCACAGCAGGCACACAAGAATGGGAAGAAGGCAGAGGTTGGAGGAGGAACCTCTTTCTTCACCTGGTTCATGGTTTTGGCTCTGCTGGGTGTCTGGACCTCTGTAGCTGTGGTGTATTTTGACCTTGTTGACTATCAAGGGGTAATCGCCAAAGCAAAGGACTTGCGCTATAATCTTTCAGAGGTATTACAAGGTAAACTTGTATCCTATGATGCTGATGGCGATGGAGACTTTGACGTGGAAGATGCTAAAGTACTACTAGGGCTGACCAAAGATGGCAGCAAAGAAAACTCAGACTCCCTTGAGGAAGTTCTCGATATTTTAGCCGAAGAGGGCACTGATTGGTTTCAAGGTTTCTTCACCTTCCTTTATGACGTTATGAATCCTTTCGAAACGCTAGAGGATGAAGAAACCGAGGCAGCAGCGGAGGACGTTGCTAGCGCGTCACAGACTGAAGGGGTTCAGGGCCAAAAGACATGCGTTATTTTAGGCCTTCAAAATCAGTAGTCACGTTTTTTACCGCGATTGTGACAGAAGCACTTTATTAGAGGAAGGACTTGATTCTGTTCCTAACACTTGAAGAAATCCGCTGTTGGGAAGATCGCCAACAGTCACTTTGGGACCTGCGAACTCTCGAGAAGATGATGTCATTATGAACATTTTGTAAATATTGGACTTGGCTGTTTCCAGTTACTAATCTTTTGACCTTAGCTGCTGTAAGTTTCACCTTTGCCGCATGCATAAGTTCCCTTATATCATAAACGGCAGTATGTACTTCTGTTTGAGCCTTGCAATTTAACACTGTACATGTGACTGCTTatgattatcatttttattttgtttttagtttattttgagaAGCTTTTATTGCACAACAATTGCATTTTGGGGTGATCTGCATCCTCAGCAACTCAGTGGAGATACATCTATTTGGTTTTTCTGTTTACTATTTTGGTATAGCTTAGTAATACAGAGAACAGACAGATTTAAAATTATGTTGCTAAGTTTATTTTTTCTCATGCGACTTGCCTTTGCTTTCTTTCATCAGAGGGTGTTTTCACCTGGTATTAACAGACTTTTTCAGGTATCTGATCGCATATAATCATCTGAGACGCATTACGGTTTTCACCTGGTATTAATGAGTTCTAATGTTGTGACGACTTGTGTTTAGTCTTTCCCCTCTTATTTCGCCACGCTCTGCATCACTTTGGCAGGACCATAATCCATGTGTTGTAATACAATTTAGTGATGTA
>TCONS_00030970
AGTACCAGAACTGAGGCTGGAATTTCAGTCAGTTTATTTGCTGCAGACAGAGAAACGTCGAAGAGCTACCACTTAAAATGGCCAAGAAAAACGTAAAAGGACCAGTTAAGAAAGAGGCTAAGCCACAGCAGGCACACAAGAATGGGAAGAAGGCAGAGGTTGGAGGAGGAACCTCTTTCTTCACCTGGTTCATGGTTTTGGCTCTGCTGGGTGTCTGGACCTCTGTAGCTGTGGTGTATTTTGACCTTGTTGACTATCAAGGGGTAATCGCCAAAGCAAAGGACTTGCGCTATAATCTTTCAGAGGTATTACAAGGTAAACTTGTATCCTATGATGCTGATGGCGATGGAGACTTTGACGTGGAAGATGCTAAAGTACTACTAGGACTGAAAGATAAGCTCACCGTTGAGACCAGAGAAACTGTCCAGTCTGCCACCCCTGAACCTGTGGAAGAAGCTCTAGATGCTATTGTGGAAGAAGAGATTCAAGCCTACGAAGCTGAAGAAGCAGCTCAGTCACCACCAGAAGCTGTGGAGGAGGAGCCTGTTGCTGAGGAGGAAGAACCACTGGCAGTAGATGAAGAGCCTGTTGTTGCAGAAGAGGAAGTAACTGAAGAGGAACCAGAGGTTGAAGAAGACCTAGAAGTTCCTGAGGAGGAACCTGAAGTTATCGAGGAAGAGCCAGAGCTCCCAGTTGAGAAACAGACTTTTGAGGAAGCAGTGGAAGAACTTGCAACTGAAGAAGAGGTCGTAGCAGTTGAAGAAGCAGTAGAGGAAGTAGCTCCTGTGGAAGAAGCAATAGAGGAAGAGGCTGCTCCGGTGGAAGAAGCTGCTGAGGAAGAGGCTGCACCAGTGGAAGAGCCAGTAGAAGTGTTTGAAGAAGTTGTACCAGTGGAAGAAGCAGTTGAGTTGGAGGAAGAGGCTGCCCCAGAAGAAAAAGAATCTGTGGAGGAAGCTGCACCGGTGGAGGAAGCTTTACCAGCAGAAGAAACTGCACCAGTAGAAGAAGCAGTTGAGGTTGAAGAAGAAGCTGTAGAGGAGGTTGTAGAAGCAGAAGAAGCTGTTGAGGAGCTTGAATCGGTTGATGAAGTTGAGGAAAATTTACCAGTAGAAGAACCAGTGGAGGATCTTGAACCGGTAGAAGAACCAGTGGAGGAAACTGAACAAGTAGAAGAAGCATTTGAGGAACCTGAACAGGCAGAGGAACCAGTAGAAGAAATAGTAGAAATACCTGAAGAGGAAACCGAGGAGTCAGTCCCTACAGAAGAAACTGTAACGAAAGAGGATGTTACAGAGGAAGTGGATGAGCCTGTTCAGGAAGAAGAGGAAGAACAAGACTTTACAGAGGAGGAAGCAGAGGAGGAAGTTGAGGTTGAGGCAGAAAATATAGAAGAAGAGGAATATGAAGCTGCAGAGGAAGAGCAGAATGAGGAGGACATTCCAGAGGATATTAACCAAACAGAAGAAGAAATTGAAGTAGAGCACAcagAAACATAAAACACGGGACAGTGTGTAAGATGGAGAAAGTACCAGCACCACATGGCATTCCACTGGAAGTTTGCAGCTGCCAATTCATGCCATTGAGTAAAATCAGAGAACACTCCAATTACCCTTTCATTTCCcctgaatttagttttttttgagactcaagcctgtttgtttattgatgatgcagtacaaatgtacatttttgtgaatGTTTTGTCAACTTTTGTTTGGTGGTTTGACTCTTAaacttttattttccttttccAAATCCCTTTTCATTGTAATTCCAGACAGCTTTTCTCCTCTAAACTCTTAACATAGATGTGAAGTAGCCATTTTGTTGAACGATCATGGATGAAAGTTTGATTACAGTGTCCTATCCTGTGTGTACAAACACAGTCATGTTGCTTTGTAGCTCAGAGATCTTCACATTttacatctctctctttctctctctggtaAATCCATTTGCTTTAATGTGAAGGTACTATGCAAAGCTGCACTGATCTTTTGCTATTTTTTACCCTTAGGTTTTGTACTACCAATATGTATTGAGTCTACATTTCCAATGTTGCATATCAAGGACATGTTTATGCTGGCAGGTTAACCAAGATAATTGCTACGTGAACTGTGTGTATTGGGGTGAATGAGCGTGCATGCGCATATTTGTGTGTCAATATGAATTTCCACTTTTAACTTTATGCGAAACAATCATTTGAGCCATTACTGATGGTGTTTTCTGTGTGTACGTTCAGCATTTTAGTACCTCTGTTGATATGTTCCTCAAtactgtattgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtatgtgtgtatttcgTTAAGAAGAGAACTTTTCACTTTCTTCATATTTAAGCCATGTCAGATTTCTTCGGTCTGCCCCATCATCAACGTTTTCTTGCGTGTTTTGTAGGCTCATGAATTGATAAGCTGTTTCAGGCGCTCCAGCTGCTGTGTAGTATGCATACAAAACAGTATTGTTTAAGGAGGTTGCCATACTACGTGATAGATGCCCACCTGAATATGGAGCAACCTACTTgacaaagtgttttatttttgtagCAGAGTAAAGATTTTTCCAAGTGCTTTTTTCCCCTTAAGTCACTTTGTACTAAAGAATTAGTCGAAATGTCACACAAATGTGTGTTGAATTGTCAGTGCATTTATTCTGACCCTTTATACTGTTGTGGCACATCTGAAAAATACACTTTTGTATTACATTAAGACGTGGAAATGGGTTGTCATTTTAATATTCTGAAAAGAGATTATTTTGGATTTACTATTAACGTTGTCGACACAATGTGGCTTTCACCATTGATGCAGAGTAAATGTGTAGAAAACTGAAAATAGGTTTGGTCTTTTGAAGGAAACCGAATTCTGGCTCCTGAATTGTTTCACTTAGGattcagttttttatatatatatatataatgttgtgTGTTACACTGTGGTTTTATGGGGCCTGCCAGAATAGATGTTGTTTTTGTGATAGACTTTAGGAAATGCTGCAAACCTCAACCTCTTTAGTAGTTTCATAACGTTTAAAAGTAGCTgcaatattatttttagtttatttctttccttctttttctaCAACACTAGAGGGTGCTTTCAACCCCTGACACTTTTGAAGTCAATGTGAATTTTTAAAGTGGTAttaatttgacttttttcttttcattaggATTTTTTTGAATTTAGAACATTTTTGGTGTAGTAAAACAGTGAATTTTACTAGAATAAAGAAGTGTTATATTCTCAAAGCCATATATGAAAGGTTGGATATAACAGCCTTTGTGTGGGTCGTGCTTTAAGGGACAGACAACGCACAACCAGCAATAAAAATTTGTgagaaggtgttttttttttttttttttttgtaatagaaATCCACATATAAACAGATAATGTTTACTCAAGGCTCTCTACTCGGAGGTTTACATGAAATCCTGCTGTATAGGCTAACTCTTTTTAAGTTATTGAGGCATTGCAATTTTAGGGAGTTTTGGGTGACCTTTCACAAATCTGTAAACAACTGTAAATGTTTGGTTTGAGCGCTGCAATAAAGGTTGGGACAACAAGA
>TCONS_00030972
GGAAGCTGCACCGGTGGAGGAAGCTTTACCAGCAGAAGAAACTGCACCAGTAGAAGAAGCAGTTGAGGTTGAAGAAGAAGCTGTAGAGGAGGTTGTAGAAGCAGAAGAAGCTGTTGAGGAGCTTGAATCGGTTGATGAAGTTGAGGAAAATTTACCAGTAGAAGAACCAGTGGAGGATCTTGAACCGGTAGAAGAACCAGTGGAGGAAACTGAACAAGTAGAAGAAGCATTTGAGGAACCTGAACAGGCAGAGGAACCAGTAGAAGAAATAGTAGAAATACCTGAAGAGGAAACCGAGGAGTCAGTCCCTACAGAAGAAACTGTAACGAAAGAGGATGTTACAGAGGAAGTGGATGAGCCTGTTCAGGAAGAAGAGGAAGAACAAGACTTTACAGAGGAGGAAGCAGAGGAGGAAGTTGAGGTTGAGGCAGAAAATATAGAAGAAGAGGAATATGAAGCTGCAGAGGAAGAGCAGAATGAGGAGGACATTCCAGGTTGGTCATTTAATTTGTTTCTATGAAGCATATAAAGAGTGGGAAGACTTGCTCGTGTAAAATCCATTCAGAAATTTGTCTTGAGTCAAGTAATCCATGTTCAGTGTCTAATTTGCTATTCTTTCTATTTTGTTTCCTTAACAGAGGATATTAACCAAACAGAAGAAGAAATTGAAGTAGAGCACAcagAAACATAAAACACGGGACAGTGTGTAAGATGGAGAAAGTACCAGCACCACATGGCATTCCACTGGAAGTTTGCAGCTGCCAATTCATGCCATTGAGTAAAATCAGAGAACACTCCAATTACCCTTTCATTTCCcct

Function

symbol description
asph Predicted to enable peptidyl-aspartic acid 3-dioxygenase activity. Predicted to be involved in peptidyl-aspartic acid hydroxylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including choroidal fissure; epidermis; hatching gland; pectoral fin; and periderm.

GO:

id name namespace
GO:0042264 peptidyl-aspartic acid hydroxylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004597 peptide-aspartate beta-dioxygenase activity molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway
ko04260 Cardiac muscle contraction

ZFIN:

id description
ZDB-GENE-031112-5 Predicted to enable peptidyl-aspartic acid 3-dioxygenase activity. Predicted to be involved in peptidyl-aspartic acid hydroxylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including choroidal fissure; epidermis; hatching gland; pectoral fin; and periderm.

Ensembl:

ensembl_id ENSDARG00000055945

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030968 False 1997 mRNA 0.45 9 26655744 26680084
TCONS_00030969 False 1382 mRNA 0.41 5 26656283 26665935
TCONS_00030970 False 3594 mRNA 0.40 10 26656290 26682182
TCONS_00030972 True 819 lncRNA 0.42 3 26677117 26680212

Neighbor

gene id symbol gene type direction distance location
XLOC_015481 ttpa coding upstream 2596 26647472 ~ 26653148 (+)
XLOC_015480 lrrc42 coding upstream 44711 26604773 ~ 26611033 (+)
XLOC_015479 NA coding upstream 60326 26592695 ~ 26595418 (+)
XLOC_015478 NA coding upstream 136195 26513608 ~ 26519549 (+)
XLOC_015477 rps8a coding upstream 153844 26498446 ~ 26501900 (+)
XLOC_015484 impa1 coding downstream 731 26682913 ~ 26688908 (+)
XLOC_015485 NA coding downstream 38886 26721068 ~ 26742206 (+)
XLOC_015486 BX511023.1 coding downstream 318360 27000542 ~ 27010345 (+)
XLOC_015487 cdh7a coding downstream 328257 27010439 ~ 27094653 (+)
XLOC_015488 BX649522.3 coding downstream 535967 27218149 ~ 27242711 (+)
XLOC_015473 CR788230.1 non-coding upstream 368239 26286465 ~ 26287505 (+)
XLOC_015470 NA non-coding upstream 488325 26166578 ~ 26167419 (+)
XLOC_015468 CR392012.1 non-coding upstream 616138 26034175 ~ 26039606 (+)
XLOC_015489 BX649522.1 non-coding downstream 638832 27321014 ~ 27324181 (+)
XLOC_015500 CR925777.1 non-coding downstream 1293372 27975554 ~ 28038625 (+)

Expression


Co-expression Network