XLOC_015500 (CR925777.1)


Basic Information

Item Value
gene id XLOC_015500
gene name CR925777.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 27975554 ~ 28038625 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031000
CAAGATTAGAATACGTTTTGGATTCCTACGACAGCTAGAGTAATTTGTTTTAACCACAGACTGTAAAAGATTTTAAACAGACTgtaaagtattttatatattttttcctgaaATCGATGAAATGGGAGTGGATCAACTTGCAAACATTTTCcttccacagaagaaagaaactattaGTGATGATGTTGACTTGCATCATGAATCACCAAGGAGCTAAAAAGTCACTTACATCTCGAATGACCTGCAGCAAGAAAAAGAAGCAAAAGAGTTGAAGCAGGCTGTCCAGCCTGTTCAGATGGATGTGCAAGATCACCAGGGCACAAAGATCAATATCGAAAAGATATGGGCATCATCTATGCTGGAGCCGAGTGACCTCAAAGTCCAATGCCTCTGTGGGGTTGTTCAGCTGAGAGGGCCGAGAAGTGGAAATCACATTCTACAGGCAACGCCAGAGCACATGAATTATTCTGATCATTTTAGGGGCAGCAAAATGAATGCTGAGGGTGAAATGAAATGTAGAGAAGCGGATGAGATGCGGCAGACCCCATGATCTTTCATTTCTTCACATTCGGACCCTTCCATCCCCCTCCTCAGAGTAAACATAAAGTCATAGACTTGGTAGATGGAGGCATATTCACGAATCTGGATTTGACAACGGCTTCACGTTTCCGCCGATAATCCACCATCTGATGACAAAGCAATAGCTGTGCCTTTTGGAGGCAGGTAAGCGCTAAGCTGTGGGAAAATAGGAATTTGGGCTAAAAATTTAATGCCGTCTGTGCTTTCTCGAATTGGCTTGTGATGGTGGACATTGTGGGGCCAATAAATGCTTTCCCCTCCACCGGTGTGCTGCATTTTCCGGCCCATTGGAGAGAGATGTTAGCACCTCAGATTTGCCTTGTTTTGAAGCGAACCTTCATGTCCTCTCTAGCAGGGAACAGCGTTTGGCTAATGTGGCTGCAAAGGTTCAGGAGTTCACAAGAAAAGCGCTGCGACTTCCTCCGCACATACAATATACTGGGGGTGTCCTTACAGATTTAGATCCTCTGTGCATGGCTTCACATTCGCTACAAACATGAAAAACCAGACATGAAGCCCAGTGGGAGATTGTTACTCGGTGCCTTACAGGTTCAATATTTCAAGCTCTAATGAATTTTCGCTGGCCTTCCTGACATCAGCTGTCTTCCAGACCACTCACTCTTCAACGCGCGCTGTTGTTCTGATGGGCAGACAGTGATTACCAAATACCTGTCATGTACTCAGATAAGCAGGGTGAAAGGACAGAAAAAGTGAAGGCCTTGTGATGTGACTAATGCTACACTTTGGTGTGGTATTCAGACTTTTAGCTCCCATTTAGGGCTGGTATTAGGATGCTTTTATGTCAATCAGATCGCAAGTGGACGACGCTGAGCATAGGTGTAAAATGGATATACAGTATGACGTTTTGAGCTTGTCCATTTTCAAACACTTACAGAGATAGTTGGAAACACTTTTCGACTGGATCGCATTTGTTGAGTAAACACTCATGTGGCCGAATGTGTTTCAACAACTGTGAAACAGCTAAAACTTTCTTGCCTACTAACTGAACATGCAATATTATGGGGTGTATTATGAGAAAGTGCACCAAAACAATCCCCTACtttatttccttcagcttattccctgtttatgaggggtcgctacagtggaatgaacagccactCTGGCAATTATTTTACACAGTTCATGCCCTTTCAGCCATAACCTAACATTCAGAGAGGGAAACACCTACACACTTACCCATTCACACACTTCAGCCAAttaagtttatccaattcacctatactgcatgtctttagaccgtTGGGAAGCCCACACAGACCTGATCTACAGTAGATGGGACTTGAGCCaacaaccttcttgttgtgaggcaaccaTGCCAGCCActtagccaccatgctgccctgcACCAAGACAAGGTATGCATAATTTGCCATTGTAACAACCCACATGCATTATGTTAGAAATGATTTCTGCCATCTGAATATTTTTATTTCCTTGCTTTCTCGCCCACTAGTAAGTCAAGTCACCATTTTTAACTTACCTGTGAGCATCCATAgctatagattgtgtcaaagcagctttaaagaAGCAATATCAGAAAGGTCACGAAGTTTCAGTTTGAGTCTGTTCAAtgatgattcagttcagttcagtatgaATCTCATTGCTAAAGGATGTGATGGCCTGTAAGGAAGCTCTACTGACCCCAGAAGGGCCTAAGGACCCAACTGCCATGAGATGGTGGAAAAAAGACCTTGGGAGAAGCAGTTCTTAGTCTGAGAATGAGTTCTCCTATGTCCAATGAAGAAGCAGAGCTGCAGTAAATAACTGGCCGATCAGTGGCCTTGTGCACTTCAGTGTGTTTCTGGGTATTGACTTTGTTCATTCAGGTGACTTTCTGTAGCACACGTGCATTACACTGAAGCCTCACGTGAACAGTATTGACACAATATGAACTAAATTAGACAGACAAGAGAGAAAACCAATTAAAAGCAGGAAAACACGCGTGAAAtgcacaaataattttttttccactgagcaaaacaactattattaatattattgaaagtcttaaaatgtcttacatttcaaaaacattattgtaggccttaaaaagtcttaaattaacttaaatatcaTCTTGTAGATCTTATAAATTTTTAAATGGgttatgtaaagctacccaatcaattCAACATGCATACGATCACCACCAACAATACATGTACATTTTGACACAACTTTAAGCAAAACTCTATTTTAACTAACAATATAACAGTACCTTGtacatacatttagttttttaaagatttaaagagttttttatgttatgttgaaaaaaattcaTCTATAGAACTAGGGTTTGCTTGATTTGACACGTTacttaaaatatgtggctaatttttaaaaaatgtatagcaTTTAGCCttatataagtctgaaatttcattcttcaCAGTCTTAATAATGTATTAAAAGGtctttaaatttgacttgaacCATTATTGTGAATGATTGAAAATTGTCATTACCGTACATCTGgtcattgacatttaaaaatctcatACAATTTTAGGTCAAatttggataaaatatgttatagGGTGCTTTCATATTTTGCCAAATTTGAGTAGAAACAGCACATTTACTGAGTACCTGTTAAACCTGTAAAAACAAATATCTAATCTGCCAGTCAGGTGGCAGCATTGAGGTATGTT

Function

GO:

id name namespace
GO:0043229 intracellular organelle cellular_component
GO:0004652 polynucleotide adenylyltransferase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097810

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031000 True 3260 lncRNA 0.40 4 27975554 28038625

Neighbor

gene id symbol gene type direction distance location
XLOC_015499 mc4r coding upstream 41690 27932781 ~ 27933864 (+)
XLOC_015498 rnf152 coding upstream 104500 27867830 ~ 27871054 (+)
XLOC_015497 buc coding upstream 115996 27855102 ~ 27859558 (+)
XLOC_015496 FO834800.2 coding upstream 133388 27830436 ~ 27842166 (+)
XLOC_015495 tmem68 coding upstream 310015 27651984 ~ 27665539 (+)
XLOC_015501 NA coding downstream 155513 28194138 ~ 28194608 (+)
XLOC_015502 NA coding downstream 206835 28245460 ~ 28350447 (+)
XLOC_015503 NA coding downstream 355318 28393943 ~ 28423487 (+)
XLOC_015504 mmp15b coding downstream 414713 28453338 ~ 28521429 (+)
XLOC_015505 nadsyn1 coding downstream 633527 28672152 ~ 28692928 (+)
XLOC_015489 BX649522.1 non-coding upstream 651373 27321014 ~ 27324181 (+)
XLOC_015488 BX649522.3 non-coding upstream 732843 27218149 ~ 27242711 (+)
XLOC_015486 BX511023.1 non-coding upstream 965209 27000542 ~ 27010345 (+)
XLOC_015485 NA non-coding upstream 1233348 26721068 ~ 26742206 (+)
XLOC_015483 BX248497.1 non-coding upstream 1302707 26667680 ~ 26672847 (+)
XLOC_015511 NA non-coding downstream 1673585 29712210 ~ 29727457 (+)
XLOC_015516 NA non-coding downstream 2034054 30072679 ~ 30089989 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G30412 NA non-coding CI01000004 null 9748346 ~ 9748560 (-)