XLOC_015511


Basic Information

Item Value
gene id XLOC_015511
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 29712210 ~ 29727457 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031013
ttattttttacgtTTACAATATGAAAACATGTAAATAGAGGCTTATATGATGATATATCTTACAGACAGGTCATCTTTTATTCTGTGACAATGAATAGGCCAGAGTCAAATCCTGCGATTAACTGTAACGTGATTTCTGAATAGATACGTTAATGTGAGGTGTGAAGCCTTGgataaaatgcaaaacaacagCTGAAAGATGTCACTATTTATCATTATGGAAATCTGACGGACCCTCGCTGTGACTGTGACAGTTTGggtgaaaaataaataactaaacagGAGAGAACGGAGTAGTAGGTTTTAAAGTGCGGTTCTAAATTGGTAAAAGAGGCATGACGTTTCCTTTGCCTTGGGCAATTGGCCTGGGTACACTGCAGGTGCTTCAAGGCTAAATTTTCCCGTGGTATCCACTTGTGTTCTGTGTACCCAGTTGTCTCTACGTCAGCTCTCGCAGTTATTAAGAGGTACCCAAACACATGCCCATGTCCACATGTCCAATCTAAACTCATGCAGAGCGCTCGGAGGCTAAAATCATGGATGGACAGGGATTGGGATAACAGGTGAAAATGCACTAACCTAAGCCAGGGAGAACATCTGCCCTTCTTTCCCTCTGTGTACTGTGGTTCCTCTTGTGTTGGTGTCTAGCACCTATACGTGGCTTTACAGCAGAGGGATATGTAAGCTGGAATGTCCATCACACCAAAAGCAGAATAGTTTGAACAGTAAGCTTGTTTACCAGAGGAGCCACCGTGCTGTATCTCAGACTTTTAAAAGCACCATCTGCAGGACTCTTCAGTGGCGAGCATGGAGCATCCATCTGcaagagaaaaaacaaaagacTTCAATAAGAGGTTATAATCATTACAGGATTGTCCTGTAATcaatttttgatgtgtttttgacaCAATTGCAAGATGTCAATTCGATGTTATTAAATTGGAAtagaaaattaaatgtaaatttggaattgaagctttcagatgaataaaacttttctttttctatttttatattttttgcatcATTACATTGGTGGTCAAGGGGGGATCAATGTGTGAATGTCAATTTGACAACAAATCGATTTTCATCTTTAACGTGTTTTTGATGACATTAAGGTACCTGCTGGGAAtcccttaaagagatagttcaccccaaaaagtTCAAATatgtgatcatttactcacccttcaaacttgtttgactttttttcttttgaaaatgaCATGTTCAGCTTTAATGATTGCCTATCTCCAACACTTTGGCCCACTGGGGCTTTGTGTTATTAACTCATATTTACATTTGCTGAGGTTTAATCCCATATTTACATTTACTGAAATCCACTTGCTATGTCAGCCTAATCAAATTATTTTTACATAGTAAAATATACCTGAACA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0048468 cell development biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0009888 tissue development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0031589 cell-substrate adhesion biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0050746 regulation of lipoprotein metabolic process biological_process
GO:0050748 negative regulation of lipoprotein metabolic process biological_process
GO:0071691 cardiac muscle thin filament assembly biological_process
GO:0006500 N-terminal protein palmitoylation biological_process
GO:0008015 blood circulation biological_process
GO:0060254 regulation of N-terminal protein palmitoylation biological_process
GO:0060262 negative regulation of N-terminal protein palmitoylation biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:1903060 negative regulation of protein lipidation biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0042044 fluid transport biological_process
GO:0060047 heart contraction biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031672 A band cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0031430 M band cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031013 True 1397 lncRNA 0.38 2 29712210 29727457

Neighbor

gene id symbol gene type direction distance location
XLOC_015510 ptf1a coding upstream 449 29710857 ~ 29711761 (+)
XLOC_015509 dlgap1a coding upstream 19385 29491314 ~ 29692825 (+)
XLOC_015508 cdh18a coding upstream 359031 29249204 ~ 29353179 (+)
XLOC_015507 cdh12a coding upstream 595318 28995776 ~ 29116892 (+)
XLOC_015506 cdh10a coding upstream 777926 28889936 ~ 28934284 (+)
XLOC_015512 si:ch211-207d6.2 coding downstream 68376 29795833 ~ 29896572 (+)
XLOC_015513 htr5aa coding downstream 198104 29925561 ~ 29940519 (+)
XLOC_015514 en2b coding downstream 248962 29976419 ~ 29979956 (+)
XLOC_015515 rbm33b coding downstream 268133 29995590 ~ 30047637 (+)
XLOC_015516 NA coding downstream 345222 30072679 ~ 30089989 (+)
XLOC_015503 NA non-coding upstream 1288723 28393943 ~ 28423487 (+)
XLOC_015502 NA non-coding upstream 1361763 28245460 ~ 28350447 (+)
XLOC_015501 NA non-coding upstream 1517602 28194138 ~ 28194608 (+)
XLOC_015500 CR925777.1 non-coding upstream 1673585 27975554 ~ 28038625 (+)
XLOC_015489 BX649522.1 non-coding upstream 2388029 27321014 ~ 27324181 (+)
XLOC_015518 BX510360.1 non-coding downstream 398957 30126414 ~ 30126936 (+)
XLOC_015521 NA non-coding downstream 469913 30197370 ~ 30197741 (+)
XLOC_015523 CR788254.2 non-coding downstream 541849 30269306 ~ 30270163 (+)
XLOC_015524 CR788254.1 non-coding downstream 548760 30276217 ~ 30277062 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G11812 NA non-coding NC_056700.1 CM032069.1 13904568 ~ 13917191 (+)