XLOC_015516


Basic Information

Item Value
gene id XLOC_015516
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30072679 ~ 30089989 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033553
GCCAGCCACATTTCCATGGATCAGAGTGCAGGGCGAAATTCTCTAAACTGGATGACCTCTCACCTTCACAGCGGAAAAAAAATATCAGAAGCGATGGATGGGGCGCACACACACGTACCTCCTCACACCTCATCCTATACCCAATGCATTCTTCATGCAATTAGTCCCTCTGAAGTTGCTTATTAGTTGGATCTCTTCTTTGTGTGTAAGTCCTTTCACTGAACTGTCACAGCTCCTGGACAAGCCTCTCCAATCCACAGCCATTTACAAATGAATGGAGCACCATGCAAACCAAACAGAGCACATCCTTTTCCTGCTCTTTCACATCTTCGGTGAAAAGGGTGGGGGGAAAACTCAATTTGTATTTGCGCAGACCATAAACAAACATCGGTCAGATCAAATGAGGCATTCAGAGCCTGAAGAAAGGTCACAGAGAAAGGGGAGGCAGAGATAGATAGAGGAGGGATTGAAGGAGGTTGAGAATGGAGCTCTTCCAATGCCAGTTCACAAGCTCGGGGCTTTTATGAGGGTGTCAGTTTTTGTTGTCAGACTGACAGTGTGGAGAAACAAGTCAATGTGAGGGAGGAGGACTGAACACCTTCCACAGGTACCTGCAATTTGATAGTAAACTAGCCAACAACACCTTTAATGACAGATGAGGCCACTGTGAAAACCACCTTTCCCGTGTGACGGATAGAGCAGCAATGATACTGGCAAAAGTTTGTGACAAACGGAGAGATTTTTATAAAGAGAACACAATAAAGGGCACAAGAAATTCATCTAAAATTGTGACATAAAACGTAAAAATtctgatataaaaaaataattcatcatAATTATGAGGTAACCGTTCAGGATAAAAGCCAAAATTACTAAGTCAAACTTAAAATTATCAAGATACAATTAATTATTATGATATTTAAGAAAAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033553 True 930 lncRNA 0.41 2 30072679 30089989

Neighbor

gene id symbol gene type direction distance location
XLOC_015515 rbm33b coding upstream 25042 29995590 ~ 30047637 (+)
XLOC_015514 en2b coding upstream 92723 29976419 ~ 29979956 (+)
XLOC_015513 htr5aa coding upstream 132160 29925561 ~ 29940519 (+)
XLOC_015512 si:ch211-207d6.2 coding upstream 176107 29795833 ~ 29896572 (+)
XLOC_015511 NA coding upstream 345222 29712210 ~ 29727457 (+)
XLOC_015517 dnajb6a coding downstream 13142 30103131 ~ 30116467 (+)
XLOC_015518 BX510360.1 coding downstream 36425 30126414 ~ 30126936 (+)
XLOC_015519 kcnb2 coding downstream 54990 30144979 ~ 30177469 (+)
XLOC_015520 rdh10b coding downstream 92442 30182431 ~ 30186307 (+)
XLOC_015521 NA coding downstream 107381 30197370 ~ 30197741 (+)
XLOC_015503 NA non-coding upstream 1649192 28393943 ~ 28423487 (+)
XLOC_015502 NA non-coding upstream 1722232 28245460 ~ 28350447 (+)
XLOC_015501 NA non-coding upstream 1878071 28194138 ~ 28194608 (+)
XLOC_015500 CR925777.1 non-coding upstream 2034054 27975554 ~ 28038625 (+)
XLOC_015523 CR788254.2 non-coding downstream 179317 30269306 ~ 30270163 (+)
XLOC_015524 CR788254.1 non-coding downstream 186228 30276217 ~ 30277062 (+)
XLOC_015525 CR788254.3 non-coding downstream 187345 30277334 ~ 30280504 (+)

Expression


Co-expression Network