XLOC_015480 (lrrc42)


Basic Information

Item Value
gene id XLOC_015480
gene name lrrc42
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26604773 ~ 26611033 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030964
AGTGatacacttttattttgaaatgtatatAAAACTCGACACATACGCGGGATGAAGGATGAAGAGCGCGTCTCTTTCAAATctacattttacaaaatacagATACTTCGTTCGGTAGTACTTTAATGCTAATAATACCTATAAAATAGTAACTAATAGTGCAGACTTTAGGTTTTGGTTTAAGAGAGCTGGTGAGGATGTATTTAGGCGAGGACTGCGGCgctgtgtatgtgagagagaacGGAGAGCTGCGGTGCGTCTCTGCCGTCAAGACCGTAGATCCTCCGCCCCAAAACAGACTCTTCACCCGGGACTTCACTTTTCAGCTCTGCATCGACACTTTACCCTCCGCGAGCCGCGCGGAAAGAAGAGACCACTTCATATTCACCTACAACAAACAGGGCAGCCTGCGCTACTCGGTCAAGACTTTATTTGACATCTCTCTGCAGTTCATCGCTGACCATGTCGAGCATGTGGACTCACTGGTGGGCTTTCCGGAGCAAATGGCCGATAAACTGTTTTCGGCCGCGGAAGAAAGAGGCAAATTCGCTGAGCTTCGCACTGCATCCAGAGCTCTGCAGCTCTTCTGCGAGGCCTATGGAGAACTAGTGCTCAAATCCCTGTGTTTGAGGAACAGGTACCTTTTGATATCAGAAAGGCTGGAGGAGATCAGACAGTTTCAGAGTCTGGAGTGTCTGGATCTTTATGGATGTAGATTAGGTGACAACCATGAGCTTTTTAAATACATCACATCTGAAGCTCTCAGCAGTCTTGTGAAGCTTTTTATGGGTGCGAACTGCCTTTCTGATGCTGGCCTGCAGAGACTGACGGCGCCGGTGAGGGTGATGAAAAAAGGCCTAGAAAACCTGCAGCTTTTAGACCTTTCGGAGAATCACATCACTGAGAAAGGGCTCAGATATCTAACATGCTTTAAAACACTACAGAAACTAGACCTATCTGGAACAAAAGTGATGATGGACGTGTCCTTGAAAGGTTTCTTCCGGATGATGGGAATGGCCCTCTCTGAGACTCCTCTGATGGACTTCACACACACTGCCTGCAAAACAGAAGGCTGGGCTGAACAGGTAATAAACCAATGGGAAATCACAGCAGCAGAAGTGCCAAAGAAAGACCCCAAACCAAGAACAAATGCCCTTCGTTTCTaTGGAAGAGAAAAGTTTGTCAGAGAGATGTTAAACTCCTGGTCTGAAACAAGTGACGCCACAAACAAAGATAAAGCTGTGCCCATTCACTTTTGTAAGGTTGATGATTGTGTGCAGAGTTCACCTTCAGGGGAGACACATTCAACACACAAGAGCAGGAAGAGGAGACTGTCAACAGAGGAAGAGCAAAGTGCAGCTCCAGTGGCAAAGCGTCTGCCTCTGTCTGTGGAAGATTTACATCTGCTGAATAGTTACTGAGTGGAAACACACAGTCATGGGATGTTTCTGCAGCGCTGTCCTCTGTGAGGAAGGTGACACTGATGTGCTTTTAGATTAGATCATTTACTATTAAAAACGGCTGCTTTATTTTTGTA

Function

symbol description
lrrc42 Orthologous to human LRRC42 (leucine rich repeat containing 42).

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4992 Orthologous to human LRRC42 (leucine rich repeat containing 42).

Ensembl:

ensembl_id ENSDARG00000030591

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030964 True 1537 mRNA 0.46 7 26604773 26611033

Neighbor

gene id symbol gene type direction distance location
XLOC_015479 NA coding upstream 9355 26592695 ~ 26595418 (+)
XLOC_015478 NA coding upstream 85224 26513608 ~ 26519549 (+)
XLOC_015477 rps8a coding upstream 102873 26498446 ~ 26501900 (+)
XLOC_015476 hectd3 coding upstream 109729 26479676 ~ 26495044 (+)
XLOC_015475 efna2a coding upstream 160270 26303627 ~ 26444503 (+)
XLOC_015481 ttpa coding downstream 36439 26647472 ~ 26653148 (+)
XLOC_015482 asph coding downstream 44711 26655744 ~ 26682182 (+)
XLOC_015483 BX248497.1 coding downstream 56647 26667680 ~ 26672847 (+)
XLOC_015484 impa1 coding downstream 71880 26682913 ~ 26688908 (+)
XLOC_015485 NA coding downstream 110035 26721068 ~ 26742206 (+)
XLOC_015473 CR788230.1 non-coding upstream 317268 26286465 ~ 26287505 (+)
XLOC_015470 NA non-coding upstream 437354 26166578 ~ 26167419 (+)
XLOC_015468 CR392012.1 non-coding upstream 565167 26034175 ~ 26039606 (+)
XLOC_015486 BX511023.1 non-coding downstream 389509 27000542 ~ 27010345 (+)
XLOC_015488 BX649522.3 non-coding downstream 607116 27218149 ~ 27242711 (+)
XLOC_015489 BX649522.1 non-coding downstream 709981 27321014 ~ 27324181 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_08947119_08949558 NA coding CI01000004 null 8947119 ~ 8949644 (+)