XLOC_015484 (impa1)


Basic Information

Item Value
gene id XLOC_015484
gene name impa1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26682913 ~ 26688908 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030973
GTGATGCTTACACAATGCGCATGCGCATTAACATTAATACGAGTTATACGATAGCTACTGTATTTCAACACACTGATGGTAAACAGGACATTGAAACGTATAGTATAAGCTACACATATACAGAGAGGATATTTCTCTATACTAAATGCTTAGGTGGTTTTCTAAAAATACCCAGATAACGTAGGGTTAATCTTCTCTGCTCCTCCAAGAACCCGGAAACACAACAATCTGACAGCCTGTCTACATTTCGCCGGTTGaaaggcaTCCTAGAATATAAAGGCACAATGCCTGACCTTTGGCAGGATGCCATGGACCATGCTGTAACTTTGGCCAGAAAAGCAGGAGAGATTGTGAGGGAGGCTTTGCAGAACGACCTGAAGATCATGTGCAAGAGCTCATCTGTTGACCTGGTCACCAAAACAGACCAGAATGTGGAGCAGCTTATTATTACGTCAGTGAAGGAGAAGTTTCCTGAACACAGTTTCATTGGTGAGGAGTCTGTGGCTGCTGGAGAACCTTGTGTTTTGACTGAAAACCCAACATGGATTGTTGACCCTGTGGATGGGACCACTAACTTTGTGCATGGATATCCATTTGTTGCCGTATCCATTGGCTTTGCTGTCAACAAAACGTTAGAGTTTGGTGTGGTTTACAGCTGTATAGAAGATAAAATGTACACGGCTCGAAAAGGAAAAGGAGCATTCTGTAACGGGCAGCCGCTGCAAGTGTCGGACCAAAAAGAGATCAACCAGTCAATCATCGCGACAGAGTTTGGCTCTAACAGAGATCCTGAAAACGTTGAAAAGATTTTCTCTAGCATGAGGAAGATCTTGTGTCTGCCAGTTCATGGGATACGTGGTGCTGGATCTGCTGCCATCAACATGTGTTTGGTGGCAGCTGGTTGTGTCGAGGCCTATTATGAGATTGGGATCCACTGTTGGGATATGGCAGCAGGAGCGGTCATCGTTTCAGAGGCCGGAGGAGTTCTCCTGGATGTTGAAGGTGGACCGTTTGACCTCATGTCCAGAAGAGTTCTAGCAGCCAATAACAAAACGATTGGAGAAAGAATCGTTCAAGAGGTTGAGGCATTCCCTGCAGTTAGAGATGATGCACCGGTTAACCCCATCAAATAAAGCTCTTTTGAAGAAAAGCACCTGTGCTGTTCAAATATGCCATTAATACATTTAGATTCACTAAACATTCTCTGCCACCTTTTCTATGCTGCATAAATGATTTGTTTCAAAGTGTTGAAAATATATCAGATTTCTGTGTACAAACTGAAGGTTTAATTgccattaaataaatttaaagctT
>TCONS_00030974
TTAATACGAGTTATACGATAGCTACTGTATTTCAACACACTGATGGTAAACAGGACATTGAAACGTATAGTATAAGCTACACATATACAGAGAGGATATTTCTCTATACTAAATGCTTAGGTGGTTTTCTAAAAATACCCAGATAACGTAGGGTTAATCTTCTCTGCTCCTCCAAGAACCCGGAAACACAACAATCTGACAGCCTGTCTACATTTCGCCGaaaggcaTCCTAGAATATAAAGGCACAATGCCTGACCTTTGGCAGGATGCCATGGACCATGCTGTAACTTTGGCCAGAAAAGCAGGAGAGATTGTGAGGGAGGCTTTGCAGAACGACCTGAAGATCATGTGCAAGAGCTCATCTGTTGACCTGGTCACCAAAACAGACCAGAATGTGGAGCAGCTTATTATTACGTCAGTGAAGGAGAAGTTTCCTGAACACAGTTTCATTGGTGAGGAGTCTGTGGCTGCTGGAGAACCTTGTGTTTTGACTGAAAACCCAACATGGATTGTTGACCCTGTGGATGGGACCACTAACTTTGTGCATGGATATCCATTTGTTGCCGTATCCATTGGCTTTGCTGTCAACAAAACGTTAGAGTTTGGTGTGGTTTACAGCTGTATAGAAGATAAAATGTACACGGCTCGAAAAGGAAAAGGAGCATTCTGTAACGGGCAGCCGCTGCAAGTGTCGGACCAAAAAGAGATCAACCAGTCAATCATCGCGACAGAGTTTGGCTCTAACAGAGATCCTGAAAACGTTGAAAAGATTTTCTCTAGCATGAGGAAGATCTTGTGTCTGCCAGTTCATGGGATACGTGGTGCTGGATCTGCTGCCATCAACATGTGTTTGGTGGCAGCTGGTTGTGTCGAGGCCTATTATGAGATTGGGATCCACTGTTGGGATATGGCAGCAGGAGCGGTCATCGTTTCAGAGGCCGGAGGAGTTCTCCTGGATGTTGAAG
>TCONS_00030975
CGAGTTATACGATAGCTACTGTATTTCAACACACTGATGGTAAACAGGACATTGAAACGTATAGTATAAGCTACACATATACAGAGAGGATATTTCTCTATACTAAATGCTTAGGTGGTTTTCTAAAAATACCCAGATAACGTAGGGTTAATCTTCTCTGCTCCTCCAAGAACCCGGAAACACAACAATCTGACAGCCTGTCTACATTTCGCCGGTTGgcaTCCTAGAATATAAAGGCACAATGCCTGACCTTTGGCAGGATGCCATGGACCATGCTGTAACTTTGGCCAGAAAAGCAGG

Function

symbol description
impa1 Predicted to enable inositol monophosphate 1-phosphatase activity. Predicted to be involved in inositol metabolic process; inositol phosphate dephosphorylation; and signal transduction. Predicted to act upstream of or within phosphatidylinositol phosphate biosynthetic process. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability and intellectual disability. Orthologous to human IMPA1 (inositol monophosphatase 1).

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0046855 inositol phosphate dephosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0006020 inositol metabolic process biological_process
GO:0006021 inositol biosynthetic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0052832 inositol monophosphate 3-phosphatase activity molecular_function
GO:0052833 inositol monophosphate 4-phosphatase activity molecular_function
GO:0008934 inositol monophosphate 1-phosphatase activity molecular_function
GO:0052834 inositol monophosphate phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-245 Predicted to enable inositol monophosphate 1-phosphatase activity. Predicted to be involved in inositol metabolic process; inositol phosphate dephosphorylation; and signal transduction. Predicted to act upstream of or within phosphatidylinositol phosphate biosynthetic process. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability and intellectual disability. Orthologous to human IMPA1 (inositol monophosphatase 1).

Ensembl:

ensembl_id ENSDARG00000003517

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030973 False 1314 mRNA 0.43 9 26682913 26688908
TCONS_00030974 False 965 mRNA 0.45 8 26682946 26686867
TCONS_00030975 True 300 mRNA 0.42 2 26682952 26684763

Neighbor

gene id symbol gene type direction distance location
XLOC_015482 asph coding upstream 731 26655744 ~ 26682182 (+)
XLOC_015483 BX248497.1 coding upstream 10066 26667680 ~ 26672847 (+)
XLOC_015481 ttpa coding upstream 29765 26647472 ~ 26653148 (+)
XLOC_015480 lrrc42 coding upstream 71880 26604773 ~ 26611033 (+)
XLOC_015479 NA coding upstream 87495 26592695 ~ 26595418 (+)
XLOC_015485 NA coding downstream 32160 26721068 ~ 26742206 (+)
XLOC_015486 BX511023.1 coding downstream 311634 27000542 ~ 27010345 (+)
XLOC_015487 cdh7a coding downstream 321531 27010439 ~ 27094653 (+)
XLOC_015488 BX649522.3 coding downstream 529241 27218149 ~ 27242711 (+)
XLOC_015489 BX649522.1 coding downstream 632106 27321014 ~ 27324181 (+)
XLOC_015478 NA non-coding upstream 163364 26513608 ~ 26519549 (+)
XLOC_015473 CR788230.1 non-coding upstream 395408 26286465 ~ 26287505 (+)
XLOC_015470 NA non-coding upstream 515494 26166578 ~ 26167419 (+)
XLOC_015500 CR925777.1 non-coding downstream 1286646 27975554 ~ 28038625 (+)

Expression


Co-expression Network