XLOC_015472 (palm1b)


Basic Information

Item Value
gene id XLOC_015472
gene name palm1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26237322 ~ 26284245 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030943
agcaactgaaatctgcaggaaggtggctctccaggaacaggattggccacccctggtctagtatATACAAGAAAATGGCAATTAACATCACTTTATAGGTGTGGAGTACAACACAAAgatgTCGGAAGCTTTGTCACAGCAAGAGAGACTTCGGGCCATTACTGAAAAGAGAAAGAAGGAGGCTGAGATTGAGAACAAAAGAAGACAACTGGAGGATGATCGCCGACAACTCCAGCATCTCAAGTCAAAGGCATTGAGGGAGCGATGGCTGTTGGACGGAGCGCCATCCAGTGGAGAAGACGAGGCACAGAAACAACTACAAGAGGACGAAGCCAAGACCAAACTGCTGGAGGAGACCATCCTCAGacTAGAACAGGAAATCGACGAGCTTGAGACTGGTGTGCCTTTGAATAAAGGAGAAAAACAGGGCAATGAAAATGCACCTGATGGTCCACTGAAGGTAGAGAATGGCATACAGCAGCCCAGCCCAGATCAAAACAGCAAGAAACAGATCACCGGCATTGAGGCCAAACTGCAGTGCACAAACCCCGACGCGGCCATTGAGAACGCCAGCGCTGAGCATCCCATAACCATGGTCTTCATGGGCTACAAGAACGTGGAGGACGAGGCCGAGACAAAGAAGACGCTGGGCATCGAGGAAACAGTAAAAGCTGAATTCGTGGTCATCGAGGATGGCGAGAGCAAAGCAGGAAACGAAGGGGCCAAAAACGACCAGGCTCCACCAAACGGCAGCGCCTCCAGTCCTGACAAAGCTGACGCCAAGAAGGAGGAGTCAAAAGAAGAGGGCAATTCGAAAGAAAAGCAGCCCTGCAAGTGCTGCACAGTCATGTAACCCTCGAAATGTAGACTCTGACCCCCCTGACCATAACGCAACAATGAAGAAGTATACCCCGTATACTGACGATTAACTTTTGTTGTCTagtatgtatttctttttttatttctattaatatttttctatatttctTGTCTTgacatttatatatctatatatacatatattttcatTATGTAATCTTATGAAGTCCAGTATTTTGCTCGTCGAAGAACAGAAAAATGAGGACCACAACTGACTCCACTTTAGACAACACCACggttttaaagaacatttttgtgGCCCTCGcccttatttttgttttaagaaagaTAAGATAAACGTCTCGATATATTAAATGAACTAGCTATTTATCTCCCGTATACATTTGTGTTTTAAGATATTACTTTATTACTGAGAAGAAATGACTATATTGATATTACGATGTTatgcttttaatatatattttgagccttctgttttaatatttcttttgTGGTTTTTGCCAAATCATCTCAGACCACTGTGAACACTGGTACATGTGTAGTCTTTGTCCACGATCACACGTTATTATGCATTACACTTCATAGTAGCCCGATACGTTTGTAAATACGATCCAGTTATTTATGACTGTTCATGCTATGGTAGAACACATTTAGTCATGTTGTTTAAAATAGGACACGTTAATTACCCCAGATCTCCATCATAATCACAGCAAATATCCGCTTTAACAGTACATCACTTTTTATAGCTGAATAATATTTATAAGATAacccaatttttttttcctgcagtaCATCAAAGATAACATTGTTAGATATAATAGTAATCAATGCCTCATATTGCATATATGTAGCCCATActgttaaaatgcatttttactgtatgcaaaatatatctttatattaattttttttgttggggGGAGAATGCATTATTTAAAGGTTTTTGATGTTAATTCACGATTCCCTCAACTAAACGAGTCCAGGAATCTAGTTTCAACATTCAGGCGTTTGATTCATAACAATGAATCATTCATTAGTGTTAATTCGAGTTGAAAAGTCTGGGGTCTAAAACACATTTCTCATTCCAAGACCACTAGCTTTGTAAATGTAGTTTTGCCGTCTTTAAGATATTTCgatttgacttattatttcatTTTGTGTAAGACAGTATGTGTTGTGGATTATGTCATGAGTTATAGGTGCTTATTGGTATGGCCAATGCCTGTTATGGTCCAAGTGTTTAAATCAGG
>TCONS_00030944
GTTTGAAGTTTGGTGTTAGTTTGAGCAACATCGCCTAAATATAAAAGGTGCTATTGTGACAGTTGGTAAGGACAGTAGGCTGACACCCAACACTGTAACAtgtaatgtaaacacaaacaatCAACATGGTGCTAGAACATTGTTGTAAAATTAGCACCAGTCTGTGGTATGTTTCGAGTCAGTGTGTTTACATCGCTTACACAAGTGTCCAGAGGGAGGCGTTTCCAAGCATCTCCTCACTCTCACCAGGAGGAGGAGATGCCAGACATTGCCCACAACACGCTTGCTgaataactgactgactgactgtcgcGCGGGAAACAAAGGCTGGGCTGCCGTGAAGTCAACAGTCGCTCCATCCTGAAGCCATGTGAGAGAGAGCCGCTGCTGCACAGCACACATTCAGCGTCGGGTCGAGCGCCGCTCCCCGGAAAACAAACCGCACACCCCTGCCAAAAGCCGTATTTGCTGCCCGAGAGAATAAGCGAATTAATGCCCATCATTAGGTAGTAGTAGCCCAGTCATATTGATCGCCTGTATCGTTTACGCCTCCGAGCGGGGGTTTGGTTTTTCCCGAGCGGGCGCGCGAGAAAAACATTCGCTATCGAAAGGGAACTGCTCTGACCATTGAgatgTCGGAAGCTTTGTCACAGCAAGAGAGACTTCGGGCCATTACTGAAAAGAGAAAGAAGGAGGCTGAGATTGAGAACAAAAGAAGACAACTGGAGGATGATCGCCGACAACTCCAGCATCTCAAGTCAAAGGCATTGAGGGAGCGATGGCTGTTGGACGGAGCGCCATCCAGTGGAGAAGACGAGGCACAGAAACAACTACAAGAGGACGAAGCCAAGACCAAACTGCTGGAGGAGACCATCCTCAGacTAGAACAGGAAATCGACGAGCTTGAGACTGGTGTGCCTTTGAATAAAGGAGAAAAACAGGGCAATGAAAATGCACCTGATGGTCCACTGAAGGCAGTAGAGAATGGCATACAGCAGCCCAGCCCAGATCAAAACAGCAAGAAACAGATCACCGGCATTGAGGCCAAACTGCAGTGCACAAACCCCGACGCGGCCATTGAGAACGCCAGCGCTGAGCATCCCATAACCATGGTCTTCATGGGCTACAAGAACGTGGAGGACGAGGCCGAGACAAAGAAGACGCTGGGCATCGAGGAAACAGTAAAAGCTGAATTCGTGGTCATCGAGGATGGCGAGAGCAAAGCAGGAAACGAAGGGGCCAAAAACGACCAGGCTCCACCAAACGGCAGCGCCTCCAGTCCTGACAAAGCTGACGCCAAGAAGGAGGAGTCAAAAGAAGAGGGCAATTCGAAAGAAAAGCAGCCCTGCAAGTGCTGCACAGTCATGTAA
>TCONS_00030945
aactgactgactgactgtcgcGCGGGAAACAAAGGCTGGGCTGCCGTGAAGTCAACAGTCGCTCCATCCTGAAGCCATGTGAGAGAGAGCCGCTGCTGCACAGCACACATTCAGCGTCGGGTCGAGCGCCGCTCCCCGGAAAACAAACCGCACACCCCTGCCAAAAGCCGTATTTGCTGCCCGAGAGAATAAGCGAATTAATGCCCATCATTAGGTAGTAGTAGCCCAGTCATATTGATCGCCTGTATCGTTTACGCCTCCGAGCGGGGGTTTGGTTTTTCCCGAGCGGGCGCGCGAGAAAAACATTCGCTATCGAAAGGGAACTGCTCTGACCATTGAgatgTCGGAAGCTTTGTCACAGCAAGAGAGACTTCGGGCCATTACTGAAAAGAGAAAGAAGGAGGCTGAGATTGAGAACAAAAGAAGACAACTGGAGGATGATCGCCGACAACTCCAGCATCTCAAGTCAAAGGCATTGAGGGAGCGATGGCTGTTGGACGGAGCGCCATCCAGTGGAGAAGACGAGGCACAGAAACAACTACAAGAGGACGAAGCCAAGACCAAACTGCTGGAGGAGACCATCCTCAGacTAGAACAGGAAATCGACGAGCTTGAGACTGGTGTGCCTTTGAATAAAGGAGAAAAACAGGGCAATGAAAATGCACCTGATGGTCCACTGAAGGTAGAGAATGGCATACAGCAGCCCAGCCCAGATCAAAACAGCAAGAAACAGATCACCGGCATTGAGGCCAAACTGCAGTGCACAAACCCCGACGCGGCCATTGAGAACGCCAGCGCTGAGCATCCCATAACCATGGTCTTCATGGGCTACAAGAACGTGGAGGACGAGGCCGAGACAAAGAAGACGCTGGGCATCGAGGAAACAGTAAAAGCTGAATTCGTGGTCATCGAGGATGGCGAGAGCAAAGCAGGAAACGAAGGGGCCAAAAACGACCAGGCTCCACCAAACGGCAGCGCCTCCAGTCCTGACAAAGCTGACGCCAAGAAGGAGGAGTCAAAAGAAGAGGGCAATTCGAAAGAAAAGCAGCCCTGCAAGTGCTGCACAGTCATGTAACCCTCGAAATGTAGACTCTGACCCCCCTGACCATAACGCAACAATGAAGAAGTATACCCCGTATACTGACGATTAACTTTTGTTGTCTagtatgtatttctttttttatttctattaatatttttctatatttctTGTCTTgacatttatatatctatatatacatatattttcatTATGTAATCTTATGAAGTCCAGTATTTTGCTCGTCGAAGAACAGAAAAATGAGGACCACAACTGACTCCACTTTAGACAACACCACggttttaaagaacatttttgtgGCCCTCGcccttatttttgttttaagaaagaTAAGATAAACGTCTCGATATATTAAATGAACTAGCTATTTATCTCCCGTATACATTTGTGTTTTAAGATATTACTTTATTACTGAGAAGAAATGACTATATTGATATTACGATGTTatgcttttaatatatattttgagccttctgttttaatatttcttttgTGGTTTTTGCCAAATCATCTCAGACCACTGTGAACACTGGTACATGTGTAGTCTTTGTCCACGATCACACGTTATTATGCATTACACTTCATAGTAGCCCGATACGTTTGTAAATACGATCCAGTTATTTATGACTGTTCATGCTATGGTAGAACACATTTAGTCATGTTGTTTAAAATAGGACACGTTAATTACCCCAGATCTCCATCATAATCACAGCAAATATCCGCTTTAACAGTACATCACTTTTTATAGCTGAATAATATTTATAAGATAacccaatttttttttcctgcagtaCATCAAAGATAACATTGTTAGATATAATAGTAATCAATGCCTCATATTGCATATATGTAGCCCATActgttaaaatgcatttttactgtatgcaaaatatatctttatattaattttttttgttggggGGAGAATGCATTATTTAAAGGTTTTTGATGTTAATTCACGATTCCCTCAACTAAACGAGTCCAGGAATCTAGTTTCAACATTCAGGCGTTTGATTCATAACAATGAATCATTCATTAGTGTTAATTCGAGTTGAAAAGTCTGGGGTCTAAAACACATTTCTCATTCCAAGACCACTAGCTTTGTAAATGTAGTTTTGCCGTCTTTAAGATATTTCgatttgacttattatttcatTTTGTGTAAGACAGTATGTGTTGTGGATTATGTCATGAGTTATAGGTGCTTATTGGTATGGCCAATGCCTGTTATGGTCCAAGTGTTTAAATCAGGaacaataaataagaaaaaaaaaagtttgtttacaA

Function

symbol description
palm1b Predicted to act upstream of or within regulation of cell shape. Predicted to be located in membrane. Is expressed in several structures, including cardiovascular system; nervous system; neural rod; trigeminal placode; and yolk syncytial layer. Orthologous to human PALM (paralemmin).

GO:

id name namespace
GO:0008360 regulation of cell shape biological_process
GO:0016020 membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1147 Predicted to act upstream of or within regulation of cell shape. Predicted to be located in membrane. Is expressed in several structures, including cardiovascular system; nervous system; neural rod; trigeminal placode; and yolk syncytial layer. Orthologous to human PALM (paralemmin).

Ensembl:

ensembl_id ENSDARG00000007818

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030943 False 2090 mRNA 0.40 7 26237322 26284210
TCONS_00030944 False 1370 mRNA 0.51 7 26240339 26282973
TCONS_00030945 True 2347 mRNA 0.41 7 26240631 26284245

Neighbor

gene id symbol gene type direction distance location
XLOC_015471 plppr3a coding upstream 27897 26179096 ~ 26209425 (+)
XLOC_015470 NA coding upstream 69903 26166578 ~ 26167419 (+)
XLOC_015469 grin3ba coding upstream 80538 26060528 ~ 26156784 (+)
XLOC_015468 CR392012.1 coding upstream 197716 26034175 ~ 26039606 (+)
XLOC_015467 slc7a14a coding upstream 246538 25860344 ~ 25990784 (+)
XLOC_015473 CR788230.1 coding downstream 2220 26286465 ~ 26287505 (+)
XLOC_015474 ptbp1a coding downstream 4056 26288301 ~ 26300619 (+)
XLOC_015475 efna2a coding downstream 19382 26303627 ~ 26444503 (+)
XLOC_015476 hectd3 coding downstream 195431 26479676 ~ 26495044 (+)
XLOC_015477 rps8a coding downstream 214201 26498446 ~ 26501900 (+)
XLOC_015461 NA non-coding upstream 1099533 25130523 ~ 25137789 (+)
XLOC_015456 NA non-coding upstream 1309568 24912293 ~ 24927754 (+)
XLOC_015455 NA non-coding upstream 1330707 24903666 ~ 24906615 (+)
XLOC_015478 NA non-coding downstream 229363 26513608 ~ 26519549 (+)
XLOC_015479 NA non-coding downstream 308450 26592695 ~ 26595418 (+)
XLOC_015483 BX248497.1 non-coding downstream 383435 26667680 ~ 26672847 (+)
XLOC_015485 NA non-coding downstream 436823 26721068 ~ 26742206 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_08730011_08731219 PALM1B coding CI01000004 null 8730011 ~ 8732509 (+)