XLOC_015471 (plppr3a)


Basic Information

Item Value
gene id XLOC_015471
gene name plppr3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26179096 ~ 26209425 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030942
CCAGTAGCCTTTTGTGTTCACGGTGCCCTACACAGTCACCGCATTCCTGTTTCGTTTACTACCCGCTCATCCGAGAGCTCTGTATTTGAGCTCTCCGGGAGAAAGTGGCCCAATTGCGAGGAAATTACTCACCTCTACTTCTGGGACTTTGCTAGGCTGTGGAGATTCAAGTGGAGTGTCCAGCTCCATTCATACTTTTATCCGTTCACTTACCTTCAGCGGACAAGGGGGAAGTGAACACAAAGATATATTGTACAAGCGTGAAATGGATTAAGTCGCACTGAGGAAAGCTGGAGCACCACAGACGAACCAAGCGAAGGCGAAGGGGTCGGAGGGAGTCCATGAATTTCCAACATCAACGAGAAAGAGattttacccgACCCAACAGCAAAATGATGTCTCCAAAAGACAAGCCCAAGAAGAAGCCTCCCAAAGACAGCATGACCTTGCTGCCATGTTTCTATTTCGTGGAGCTGCCAATCGTGGCGTCCTCCATGATCTCTCTTTACTTCTTGGAGCTGACAGACGTGTTACAGCCAGCCAAAGTGGGTTTCCGGTGCCACGACCGCACACTGAGCATGCCCTATGTGGAAACGGGAGACGAGCTCATCCCTCTGCTCATGCTGCTCAGCCTGGCCTTCGCTGGCCCCGCAGCGTCTaTCATGCTGGGTGAAGCCTTGATGTACTGCATGCAGTCCAAACTGAAGATTCGCTCTGGTTCAGAAGGAAGTATAAATGCTGGAGGCTGCAACTTCAACTCCTTTCTACGAAGAACAGTCCGCTTCGTAGGTGTTCATGTGTTTGGGTTGTGCGCCACTGCATTGGTGACTGACGTTATCCAGCTGGCCACCGGATATCATGCTCCATTCTTCCTAACCGTGTGCAAACCCAACTACACACTACCAGGCGTGGCGTGCGACAAAAACCCCTACATAACCCAGGACATCTGCTCAGGCCGAGACCAGTATGCCATCCTGTCAGCAAGGAAAACTTTCCCCTCCCAGCACGCAACTCTGTCTGGCTTCGCAGCCGTCTACATCTCTATGTACTTTAATGCCACCATCTCGGACAGCACCAAGCTGCTGAAGCCTGTGCTGGTGTTTGCATTTGCAATAGCAGCAGCCCTGGCAAGCCTGACCCAGATCACCCAGTACCGAAGCCACCCCATTGACGTCTATGTGGGCTTTGTGATTGGAGCTGGCATCGCAGTTTATCTTGCACTGTATGCAGTGGGGAACTTTAGATCCAACGAGGAAGCCTCCCCAAGGCCATTGAAGCAGCCCCCTCCTCCACAAAAAGATCCTCTCAGAGAGCTGACACAGCGAGGCCATGACTCGGTCTACCAAAAGGCCCATGCATCTGAGAGCAACGACGAGCTGACTGCTCCACCACATGTTGCTGGCCTGAACCGCAAGGTGCGTCGAGAGAAGGCATCGATGGGCAGCCTGAAGAGAGCTAGTGCAGACGTGGAACTGCTTGCACCTCGCAGCCCAATGGGGAAGGAGACCATGGTGACCTTCAGCAACACACTGCCCCGTGCCAACACCAACGCCATAGAGGAGCCTGCTCAGCGCCACATGACTTTCCATGTGTCGATGGACACTCAGCGCTCCAAACAGCTGGTGTCCGAATGGAAGCAGAAATCAATAGAGATGCGTAGTCTCAGCCTCAGGGACGAGGAAGAGGAAGAAGGAGCAACTGCAGAGGGAGTTGACGGAGTCGAGGTGGAAACATCTGACGAGCTGGGTATGCCAACCTCTCTATATCCTACCGTGCAAGCCAACAGGGGAGCAACGGCGGCAGCAGGAGGAACCAGGGTGATGATGCCTCAGAGGCCCGGTGCCCCACAGTTGGTTCATATCCCAGAGGAAGCCACCAGGCCACCACCGGTGTCTCCTAAAAGTGCCATCACAAGGGCTAAATGGTTGTCCATGAGCGAGAAAGGAGGTCCAGTACCAGCTGCAACTCCAGAACCTCCACGACTGCCCAACCAGCCACGGGTTATGCAAGTCATTGCCATGTCTAAGCAACATGGTCCAGGTAGCATCACTACTCCAAAGTCCTCTGAGACAGCCTCATCATGTGCCACATCTAGCACTGGTTCAGAGTCTCCATACTACCGAATTCCATCAGAGCAAGACCGTAGCAGCATTGTCACAGTGGATGCTCACGCTCCTCATCATCCAGTGGTTCGTCTTTCTTCAGGCAATGGGAACACCTGGGATTGGAGGAGCACCTCTAATGGCAACACTGAGGTGCATGAGACCAGCCGGACACTGCCCAGACAGGAGTGCATCCGTGATTATCGTCCCAGGAAAACAGAGTCCCTCTGCTCCTCTACCAGTGATCTTGACCCAGGGATGCTGCCTCCGCCACCTCATCCTGACCTGCTCTTGGACAGCAGCCTCAGTCGAGATTCCTCGCTTCACCGTAATTCCTCGATCTCAGCCAAAGACTGGGAACCTGGACAGCCTCACCCGGAACCAGACCACTTCTTTAAGAACTTACAAACAAACAGGCAATTTAAAGATTGAGGGGCGGGGTGACTGTAGGCTAAAGCAGGGACACTACAGACTTCTTTTTTGGGTAAAATCCAATGTGAATAATTGTGTTTTCAGTGGTTGGCGGGAGAAGGCAGTCTTCTTGGTTATCTCACATTGAGCATCTGGAGTGGATTAGTGCAGTGGAGCACCAGAAGGATCACACAGACTTGAGGAGGCCGTTGAGTGTTCATGCACAATCTGTGAGGAAAGATGACCCACAAACCTCAAAAAAGCGAAATAGTTGTAATTAAGGTGTAATGAATACATGTATCAAGGGTTTCTGTTCTTTTCAATTTTCACAGTCCAGGACTTAAGATCAAGTTCACATGAGACAATACCAAGCAACCagccatatttatatttttaattggaggttcattcattcacacaagAACTTCAGATGCATTGTACAAGAGAAATTCATGCCTCAGTTCACTGataacttaaggctgatttatacttctgtgtcaagtgcacGCGTATGCTCCGGTGCAGCCTTCGTGTGGTCGCATAGCTCTCTTTGTGGCCGTCACTGACTcgtacctctcaaaaaatgtaactaaccATCACAGCGACACGTAGCACAAACTCTGTGGTTTGTCAGCTTGCTAGCattgacgagtgtgggcggggccgagagcctCGTGAAACCGTTGGACCAAGTGtgtacaagtgtggagtcccgtgaagtagctctagatgaaaagttttgttttgtgtttaccttatgattaaagttgttgcaattCCGCCAGTTCCCACCTCAAAATTGGCTAGGTTCAACCACTTGttcattaaggtagcattcagaaaaaacaaaacaccaatgAAGAAAcccgacacagagaaacatataaacctactgccatctagtgtttcgggagtgttattgcagagcaacacaaacatcgcacagaagtataaatgcacagctacacgctaGGCATGCACtgtgggtcacgccaatcactcgacgcagaaatataaaccaggctGGGTACAGTTTTTGTTGTGGGAATACGAGCAACTTAGCAGTCTCATCGCTTTGCTGTGTGTGGAGTCAGTTTGATGTAGGCCTAGTCACTTTCTTGTTTTTTATACTAAAATATGAAGTACTATTGCTTGTTTGTGCGTgttgcatgtgtgtttatttatatctCTTCTAGACCTTGAATGGACTGTTTCATATCAGCAGGGATGACCTTTCATTTTGCTGCTCAATGTTTAAGGTTTTTTGTAACaaactttgaaaataaaattgtaatactaTCTGTTTT

Function

symbol description
plppr3a Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; phospholipid metabolic process; and signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in central nervous system. Orthologous to human PLPPR3 (phospholipid phosphatase related 3).

GO:

id name namespace
GO:0046839 phospholipid dephosphorylation biological_process
GO:0006644 phospholipid metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008195 phosphatidate phosphatase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0042577 lipid phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-555 Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; phospholipid metabolic process; and signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in central nervous system. Orthologous to human PLPPR3 (phospholipid phosphatase related 3).

Ensembl:

ensembl_id ENSDARG00000010144

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030942 True 3820 mRNA 0.49 8 26179096 26209425

Neighbor

gene id symbol gene type direction distance location
XLOC_015470 NA coding upstream 11677 26166578 ~ 26167419 (+)
XLOC_015469 grin3ba coding upstream 22312 26060528 ~ 26156784 (+)
XLOC_015468 CR392012.1 coding upstream 139490 26034175 ~ 26039606 (+)
XLOC_015467 slc7a14a coding upstream 188312 25860344 ~ 25990784 (+)
XLOC_015466 eif5a2 coding upstream 333759 25839193 ~ 25845337 (+)
XLOC_015472 palm1b coding downstream 27897 26237322 ~ 26284245 (+)
XLOC_015473 CR788230.1 coding downstream 77040 26286465 ~ 26287505 (+)
XLOC_015474 ptbp1a coding downstream 78876 26288301 ~ 26300619 (+)
XLOC_015475 efna2a coding downstream 94202 26303627 ~ 26444503 (+)
XLOC_015476 hectd3 coding downstream 270251 26479676 ~ 26495044 (+)
XLOC_015461 NA non-coding upstream 1041307 25130523 ~ 25137789 (+)
XLOC_015456 NA non-coding upstream 1251342 24912293 ~ 24927754 (+)
XLOC_015455 NA non-coding upstream 1272481 24903666 ~ 24906615 (+)
XLOC_015478 NA non-coding downstream 304183 26513608 ~ 26519549 (+)
XLOC_015479 NA non-coding downstream 383270 26592695 ~ 26595418 (+)
XLOC_015483 BX248497.1 non-coding downstream 458255 26667680 ~ 26672847 (+)
XLOC_015485 NA non-coding downstream 511643 26721068 ~ 26742206 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_08693419_08703448 PLPPR3A coding CI01000004 null 8693419 ~ 8704156 (+)