RNA id: TCONS_00030945


Basic Information

Item Value
RNA id TCONS_00030945
length 2347
RNA type mRNA
GC content 0.41
exon number 7
gene id XLOC_015472
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26237322 ~ 26284245 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aactgactgactgactgtcgcGCGGGAAACAAAGGCTGGGCTGCCGTGAAGTCAACAGTCGCTCCATCCTGAAGCCATGTGAGAGAGAGCCGCTGCTGCACAGCACACATTCAGCGTCGGGTCGAGCGCCGCTCCCCGGAAAACAAACCGCACACCCCTGCCAAAAGCCGTATTTGCTGCCCGAGAGAATAAGCGAATTAATGCCCATCATTAGGTAGTAGTAGCCCAGTCATATTGATCGCCTGTATCGTTTACGCCTCCGAGCGGGGGTTTGGTTTTTCCCGAGCGGGCGCGCGAGAAAAACATTCGCTATCGAAAGGGAACTGCTCTGACCATTGAgatgTCGGAAGCTTTGTCACAGCAAGAGAGACTTCGGGCCATTACTGAAAAGAGAAAGAAGGAGGCTGAGATTGAGAACAAAAGAAGACAACTGGAGGATGATCGCCGACAACTCCAGCATCTCAAGTCAAAGGCATTGAGGGAGCGATGGCTGTTGGACGGAGCGCCATCCAGTGGAGAAGACGAGGCACAGAAACAACTACAAGAGGACGAAGCCAAGACCAAACTGCTGGAGGAGACCATCCTCAGacTAGAACAGGAAATCGACGAGCTTGAGACTGGTGTGCCTTTGAATAAAGGAGAAAAACAGGGCAATGAAAATGCACCTGATGGTCCACTGAAGGTAGAGAATGGCATACAGCAGCCCAGCCCAGATCAAAACAGCAAGAAACAGATCACCGGCATTGAGGCCAAACTGCAGTGCACAAACCCCGACGCGGCCATTGAGAACGCCAGCGCTGAGCATCCCATAACCATGGTCTTCATGGGCTACAAGAACGTGGAGGACGAGGCCGAGACAAAGAAGACGCTGGGCATCGAGGAAACAGTAAAAGCTGAATTCGTGGTCATCGAGGATGGCGAGAGCAAAGCAGGAAACGAAGGGGCCAAAAACGACCAGGCTCCACCAAACGGCAGCGCCTCCAGTCCTGACAAAGCTGACGCCAAGAAGGAGGAGTCAAAAGAAGAGGGCAATTCGAAAGAAAAGCAGCCCTGCAAGTGCTGCACAGTCATGTAACCCTCGAAATGTAGACTCTGACCCCCCTGACCATAACGCAACAATGAAGAAGTATACCCCGTATACTGACGATTAACTTTTGTTGTCTagtatgtatttctttttttatttctattaatatttttctatatttctTGTCTTgacatttatatatctatatatacatatattttcatTATGTAATCTTATGAAGTCCAGTATTTTGCTCGTCGAAGAACAGAAAAATGAGGACCACAACTGACTCCACTTTAGACAACACCACggttttaaagaacatttttgtgGCCCTCGcccttatttttgttttaagaaagaTAAGATAAACGTCTCGATATATTAAATGAACTAGCTATTTATCTCCCGTATACATTTGTGTTTTAAGATATTACTTTATTACTGAGAAGAAATGACTATATTGATATTACGATGTTatgcttttaatatatattttgagccttctgttttaatatttcttttgTGGTTTTTGCCAAATCATCTCAGACCACTGTGAACACTGGTACATGTGTAGTCTTTGTCCACGATCACACGTTATTATGCATTACACTTCATAGTAGCCCGATACGTTTGTAAATACGATCCAGTTATTTATGACTGTTCATGCTATGGTAGAACACATTTAGTCATGTTGTTTAAAATAGGACACGTTAATTACCCCAGATCTCCATCATAATCACAGCAAATATCCGCTTTAACAGTACATCACTTTTTATAGCTGAATAATATTTATAAGATAacccaatttttttttcctgcagtaCATCAAAGATAACATTGTTAGATATAATAGTAATCAATGCCTCATATTGCATATATGTAGCCCATActgttaaaatgcatttttactgtatgcaaaatatatctttatattaattttttttgttggggGGAGAATGCATTATTTAAAGGTTTTTGATGTTAATTCACGATTCCCTCAACTAAACGAGTCCAGGAATCTAGTTTCAACATTCAGGCGTTTGATTCATAACAATGAATCATTCATTAGTGTTAATTCGAGTTGAAAAGTCTGGGGTCTAAAACACATTTCTCATTCCAAGACCACTAGCTTTGTAAATGTAGTTTTGCCGTCTTTAAGATATTTCgatttgacttattatttcatTTTGTGTAAGACAGTATGTGTTGTGGATTATGTCATGAGTTATAGGTGCTTATTGGTATGGCCAATGCCTGTTATGGTCCAAGTGTTTAAATCAGGaacaataaataagaaaaaaaaaagtttgtttacaA

Function

GO:

id name namespace
GO:0008360 regulation of cell shape biological_process
GO:0016020 membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1147 Predicted to act upstream of or within regulation of cell shape. Predicted to be located in membrane. Is expressed in several structures, including cardiovascular system; nervous system; neural rod; trigeminal placode; and yolk syncytial layer. Orthologous to human PALM (paralemmin).

Ensembl:

ensembl_id ENSDART00000129895

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033544 lncRNA upstream 73212 26166578 ~ 26167419 (+) True XLOC_015470
TCONS_00030930 lncRNA upstream 403799 25834095 ~ 25836832 (+) True XLOC_015465
TCONS_00030924 lncRNA upstream 858290 25315658 ~ 25382341 (+) False XLOC_015463
TCONS_00030918 lncRNA upstream 1102842 25130523 ~ 25137789 (+) True XLOC_015461
TCONS_00033263 lncRNA upstream 1312877 24912293 ~ 24927754 (+) True XLOC_015456
TCONS_00030948 lncRNA downstream 5057 26289302 ~ 26290690 (+) True XLOC_015474
TCONS_00030952 lncRNA downstream 198652 26482897 ~ 26483391 (+) False XLOC_015476
TCONS_00030953 lncRNA downstream 207514 26491759 ~ 26494145 (+) False XLOC_015476
TCONS_00030954 lncRNA downstream 210055 26494300 ~ 26495044 (+) True XLOC_015476
TCONS_00030956 lncRNA downstream 214286 26498531 ~ 26501306 (+) False XLOC_015477
TCONS_00030942 mRNA upstream 31206 26179096 ~ 26209425 (+) True XLOC_015471
TCONS_00030941 mRNA upstream 83847 26060528 ~ 26156784 (+) True XLOC_015469
TCONS_00030939 mRNA upstream 249847 25929619 ~ 25990784 (+) True XLOC_015467
TCONS_00030938 mRNA upstream 252166 25868404 ~ 25988465 (+) False XLOC_015467
TCONS_00030937 mRNA upstream 292996 25868404 ~ 25947635 (+) False XLOC_015467
TCONS_00030947 mRNA downstream 4056 26288301 ~ 26300619 (+) False XLOC_015474
TCONS_00030949 mRNA downstream 19382 26303627 ~ 26444503 (+) True XLOC_015475
TCONS_00030950 mRNA downstream 195431 26479676 ~ 26495042 (+) False XLOC_015476
TCONS_00030951 mRNA downstream 195431 26479676 ~ 26495044 (+) False XLOC_015476
TCONS_00030955 mRNA downstream 214201 26498446 ~ 26501868 (+) False XLOC_015477
TCONS_00030940 other upstream 201025 26034175 ~ 26039606 (+) True XLOC_015468
TCONS_00030908 other upstream 1394632 24842587 ~ 24845999 (+) True XLOC_015452
TCONS_00030897 other upstream 1699866 24540047 ~ 24540765 (+) False XLOC_015445
TCONS_00030898 other upstream 1699906 24540209 ~ 24540725 (+) True XLOC_015445
TCONS_00030891 other upstream 1742790 24484289 ~ 24497841 (+) True XLOC_015443
TCONS_00030946 other downstream 2220 26286465 ~ 26287505 (+) True XLOC_015473
TCONS_00030957 other downstream 214289 26498534 ~ 26501294 (+) False XLOC_015477
TCONS_00030958 other downstream 214316 26498561 ~ 26501275 (+) False XLOC_015477
TCONS_00030959 other downstream 214317 26498562 ~ 26501305 (+) False XLOC_015477
TCONS_00030960 other downstream 215404 26499649 ~ 26499754 (+) False XLOC_015477

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_08730011_08731219.mRNA True 1914 mRNA 0.37 4 CI01000004 8730011 ~ 8732509 (+)